MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.5 nTPM
HPA:52.5 nTPM
GTEx:60.4 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:96.9 nTPM
Mouse:30.3 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
1870 Female, age 42, unknown 46.6
2666 Male, age 74, left hemisphere 45.2
1833 Male, age 53, unknown 44.7
2828 Female, age 72, unknown 44.4
2411 Female, age 72, unknown 43.9
1830 Male, age 51, unknown 43.4
2019 Male, age 18, unknown 42.0
2586 Male, age 75, left hemisphere 41.0
1827 Male, age 72, unknown 40.9
2219 Male, age 76, both hemispheres 38.8
Dorsal raphe nucleus
nTPM: 46.2
2016 Female, age 72, unknown 48.5
1828 Male, age 53, unknown 47.9
2047 Male, age 72, unknown 46.9
2298 Female, age 72, unknown 44.1
2750 Male, age 76, both hemispheres 43.5
Inferior colliculus
nTPM: 42.8
1848 Female, age 42, unknown 45.4
1890 Male, age 53, unknown 44.1
2849 Male, age 72, unknown 41.3
2097 Female, age 72, unknown 40.2
Median raphe nucleus
nTPM: 42.1
2220 Male, age 76, midline 42.1
Pedunculopontine tegmental nucleus
nTPM: 43.5
2334 Male, age 80, both hemispheres 45.7
2338 Male, age 61, both hemispheres 42.5
1921 Female, age 85, both hemispheres 42.2
Periaquaductal grey, anterior
nTPM: 44.0
1947 Male, age 18, unknown 47.3
2502 Female, age 75, unknown 45.9
1795 Male, age 51, unknown 38.8
Periaquaductal grey, dorsal
nTPM: 44.4
2850 Male, age 76, both hemispheres 48.5
1840 Male, age 53, unknown 44.2
2464 Female, age 72, unknown 42.5
1831 Male, age 72, unknown 42.4
Periaquaductal grey, lateral
nTPM: 41.3
2140 Male, age 76, both hemispheres 46.3
2053 Male, age 18, unknown 41.6
2272 Male, age 74, both hemispheres 36.2
Pretectal area
nTPM: 41.8
2667 Female, age 75, unknown 45.9
2316 Male, age 76, right hemisphere 44.7
2224 Female, age 72, unknown 43.3
2825 Male, age 18, unknown 43.2
1817 Female, age 42, unknown 42.3
1815 Male, age 53, unknown 41.9
1944 Female, age 72, unknown 41.7
2407 Male, age 75, both hemispheres 40.3
2273 Male, age 74, both hemispheres 39.8
1816 Male, age 51, unknown 38.6
2007 Male, age 72, unknown 38.3
Red nucleus
nTPM: 45.9
1821 Female, age 72, unknown 53.1
1954 Female, age 42, unknown 49.0
1904 Male, age 53, unknown 48.2
2503 Female, age 72, unknown 47.7
1865 Male, age 51, unknown 47.2
2227 Male, age 72, unknown 47.2
2769 Male, age 72, unknown 46.6
2823 Male, age 76, right hemisphere 46.3
2725 Female, age 75, unknown 43.4
2588 Male, age 74, left hemisphere 43.2
2785 Male, age 18, unknown 39.9
2584 Male, age 75, left hemisphere 38.9
Substantia nigra
nTPM: 52.5
1916 Female, age 42, unknown 63.9
2699 Male, age 18, unknown 63.5
1851 Male, age 51, unknown 59.3
2241 Male, age 72, unknown 57.1
2665 Male, age 74, both hemispheres 49.6
2590 Female, age 75, unknown 48.0
2409 Female, age 72, unknown 47.7
1941 Male, age 53, unknown 46.0
1889 Female, age 72, unknown 45.9
2583 Male, age 75, right hemisphere 43.7
Superior colliculus
nTPM: 41.5
1995 Male, age 72, unknown 44.0
1839 Male, age 51, unknown 43.9
2587 Male, age 74, left hemisphere 43.2
2664 Male, age 75, both hemispheres 42.9
1895 Male, age 76, right hemisphere 42.6
1913 Female, age 42, unknown 41.6
2668 Female, age 75, unknown 40.8
1796 Male, age 53, unknown 40.4
2087 Female, age 72, unknown 40.2
2261 Male, age 18, unknown 35.8
Ventral tegmental area
nTPM: 48.1
1915 Female, age 42, unknown 52.4
2410 Female, age 72, unknown 51.1
1942 Male, age 51, unknown 47.1
2021 Male, age 53, unknown 46.8
2218 Male, age 76, both hemispheres 46.5
2223 Female, age 72, unknown 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.4
Samples: 139

Max nTPM: 117.9
Min nTPM: 17.0
Std nTPM: 16.8
Median nTPM: 58.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 117.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 99.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 95.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 94.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 93.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 92.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 92.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 91.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 91.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 90.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 86.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.9
Pig sample Sample description nTPM
Midbrain
nTPM: 96.9
Samples: 4

Max nTPM: 117.3
Min nTPM: 70.8
Sample A Female 117.3
Sample B Female 98.3
Sample C Male 101.3
Sample D Male 70.8
Periaqueductal gray
nTPM: 79.7
Samples: 3

Max nTPM: 86.2
Min nTPM: 71.7
Sample B Female 86.2
Sample C Male 81.2
Sample D Male 71.7
Substantia nigra
nTPM: 88.5
Samples: 4

Max nTPM: 99.2
Min nTPM: 73.0
Sample A Female 99.2
Sample B Female 73.0
Sample C Male 88.5
Sample D Male 93.3
Superior colliculi
nTPM: 80.6
Samples: 4

Max nTPM: 90.1
Min nTPM: 60.6
Sample A Female 90.1
Sample B Female 60.6
Sample C Male 88.3
Sample D Male 83.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 31.6
Min nTPM: 28.8
Sample A Male 28.8
Sample B Male 31.6
Sample C Female 29.4
Sample D Female 31.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
2401 Antisense, RP_Baylor_102741, Mouse strain C57BL/6J (56 days, male) 1.3
2402 Antisense, RP_Baylor_102741, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.