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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:3653.4 nTPM
FANTOM5:1673.0 Scaled Tags Per Million
Pig:869.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA013143Antibody CAB000118
Glial cells MediumMedium
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3653.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3653.4
Samples: 246

Max nTPM: 13350.4
Min nTPM: 555.9
Std nTPM: 2032.2
Median nTPM: 3086.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 13350.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11394.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 11038.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 10360.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9503.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 9447.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 8905.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 8789.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8323.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 7660.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 7535.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 7127.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 7124.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 7018.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6859.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 6810.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 6687.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 6667.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6641.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 6627.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 6599.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 6594.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 6508.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 6351.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 6339.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 6299.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 6283.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 6135.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 6089.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 6038.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 6029.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 5958.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 5956.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 5842.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5805.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 5774.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 5733.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 5689.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 5679.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 5631.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 5591.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 5572.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 5533.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 5398.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5304.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5243.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 5188.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5156.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 5153.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 5030.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 4993.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4991.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 4944.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4909.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4900.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4888.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 4860.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4783.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4750.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 4746.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 4742.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4729.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 4681.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4662.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 4638.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 4603.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 4596.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4581.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4548.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 4482.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 4473.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 4434.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 4397.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 4350.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 4179.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 4161.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4119.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 4115.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4023.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3993.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3953.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 3940.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3928.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3901.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 3898.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3895.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 3871.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3825.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 3806.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3783.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 3780.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3772.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3766.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3763.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3757.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3754.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 3737.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 3715.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3714.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 3682.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3680.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 3632.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3615.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3584.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3456.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 3445.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 3435.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3423.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3394.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 3393.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 3360.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 3349.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 3345.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3322.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3316.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3310.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3289.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3180.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 3164.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3152.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 3151.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3133.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 3098.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 3074.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 3024.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 3001.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2987.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2967.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2956.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2926.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2911.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2910.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2906.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2897.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2886.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2885.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2848.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2847.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2839.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2830.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2827.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2823.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2820.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2797.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2759.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2756.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2753.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2746.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2735.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2733.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2732.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2730.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2724.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 2717.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2663.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2658.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2646.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2549.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2538.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2538.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2533.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2526.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2526.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2520.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2517.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2511.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2503.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2503.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2486.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2477.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2468.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2466.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2441.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2439.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2437.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2433.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2400.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2381.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2370.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2321.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2308.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2277.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2269.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2238.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2210.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2197.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2179.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2168.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2167.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2148.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2128.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2114.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2112.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2099.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2093.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2085.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2080.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2062.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2033.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1998.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1978.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1973.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1947.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1934.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1890.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1876.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1867.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1865.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1846.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1839.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1833.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1828.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1811.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1801.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1789.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1768.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1750.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1745.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1731.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1719.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1683.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1570.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1548.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1516.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1513.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1479.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1479.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1459.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1401.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1357.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1342.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1326.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1317.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1305.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1242.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1220.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1192.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1186.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1183.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1131.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1119.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 976.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 913.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 817.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 749.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 555.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1673.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1673.0
FF:10164-103B2 76 years, female 1673.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 869.3
Pig sample Sample description nTPM
Caudate
nTPM: 869.3
Samples: 4

Max nTPM: 1043.5
Min nTPM: 717.3
Sample A Female 800.8
Sample B Female 1043.5
Sample C Male 915.4
Sample D Male 717.3

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