MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA:26.3 nTPM
GTEx:31.8 nTPM
FANTOM5:266.5 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:111.9 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
1870 Female, age 42, unknown 27.8
2411 Female, age 72, unknown 25.9
2586 Male, age 75, left hemisphere 24.9
1833 Male, age 53, unknown 23.4
2019 Male, age 18, unknown 23.4
2828 Female, age 72, unknown 22.7
1830 Male, age 51, unknown 22.6
1827 Male, age 72, unknown 22.0
2219 Male, age 76, both hemispheres 21.0
2666 Male, age 74, left hemisphere 18.8
Dorsal raphe nucleus
nTPM: 23.0
2750 Male, age 76, both hemispheres 24.8
2047 Male, age 72, unknown 24.2
1828 Male, age 53, unknown 24.1
2298 Female, age 72, unknown 21.8
2016 Female, age 72, unknown 20.0
Inferior colliculus
nTPM: 23.4
1848 Female, age 42, unknown 24.6
2097 Female, age 72, unknown 23.8
2849 Male, age 72, unknown 23.0
1890 Male, age 53, unknown 22.0
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Pedunculopontine tegmental nucleus
nTPM: 23.7
2334 Male, age 80, both hemispheres 26.7
1921 Female, age 85, both hemispheres 22.9
2338 Male, age 61, both hemispheres 21.6
Periaquaductal grey, anterior
nTPM: 22.7
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 22.7
1795 Male, age 51, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 20.7
2850 Male, age 76, both hemispheres 22.4
1840 Male, age 53, unknown 21.1
1831 Male, age 72, unknown 19.7
2464 Female, age 72, unknown 19.5
Periaquaductal grey, lateral
nTPM: 20.2
2272 Male, age 74, both hemispheres 21.6
2053 Male, age 18, unknown 20.2
2140 Male, age 76, both hemispheres 18.9
Pretectal area
nTPM: 21.9
1817 Female, age 42, unknown 27.4
1944 Female, age 72, unknown 23.9
2007 Male, age 72, unknown 23.6
1816 Male, age 51, unknown 23.0
2224 Female, age 72, unknown 22.5
2825 Male, age 18, unknown 21.7
1815 Male, age 53, unknown 21.0
2273 Male, age 74, both hemispheres 20.9
2667 Female, age 75, unknown 20.4
2316 Male, age 76, right hemisphere 18.6
2407 Male, age 75, both hemispheres 17.7
Red nucleus
nTPM: 26.3
1821 Female, age 72, unknown 31.2
1865 Male, age 51, unknown 28.3
1954 Female, age 42, unknown 28.3
2769 Male, age 72, unknown 28.2
2503 Female, age 72, unknown 27.4
2227 Male, age 72, unknown 27.3
2725 Female, age 75, unknown 25.8
2785 Male, age 18, unknown 24.8
1904 Male, age 53, unknown 24.6
2588 Male, age 74, left hemisphere 24.4
2823 Male, age 76, right hemisphere 22.8
2584 Male, age 75, left hemisphere 22.1
Substantia nigra
nTPM: 25.7
1916 Female, age 42, unknown 31.6
1941 Male, age 53, unknown 31.3
1889 Female, age 72, unknown 28.3
1851 Male, age 51, unknown 26.6
2699 Male, age 18, unknown 26.4
2409 Female, age 72, unknown 26.0
2590 Female, age 75, unknown 23.4
2241 Male, age 72, unknown 23.2
2583 Male, age 75, right hemisphere 21.8
2665 Male, age 74, both hemispheres 18.9
Superior colliculus
nTPM: 22.1
2587 Male, age 74, left hemisphere 27.1
1839 Male, age 51, unknown 23.4
1796 Male, age 53, unknown 23.3
2668 Female, age 75, unknown 23.3
1913 Female, age 42, unknown 22.8
2261 Male, age 18, unknown 22.1
1995 Male, age 72, unknown 20.9
1895 Male, age 76, right hemisphere 20.7
2087 Female, age 72, unknown 20.6
2664 Male, age 75, both hemispheres 16.8
Ventral tegmental area
nTPM: 25.4
2410 Female, age 72, unknown 29.9
2223 Female, age 72, unknown 27.5
1915 Female, age 42, unknown 25.9
2218 Male, age 76, both hemispheres 25.9
1942 Male, age 51, unknown 22.6
2021 Male, age 53, unknown 20.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.8
Samples: 139

Max nTPM: 66.6
Min nTPM: 19.0
Std nTPM: 7.7
Median nTPM: 30.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 60.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 50.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 49.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 44.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 44.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 43.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 43.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 266.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 266.5
FF:10158-103A5 76 years, female 266.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.8
Pig sample Sample description nTPM
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 47.9
Min nTPM: 35.8
Sample A Female 46.8
Sample B Female 35.8
Sample C Male 47.9
Sample D Male 39.5
Periaqueductal gray
nTPM: 33.8
Samples: 3

Max nTPM: 36.9
Min nTPM: 31.7
Sample B Female 32.8
Sample C Male 36.9
Sample D Male 31.7
Substantia nigra
nTPM: 37.7
Samples: 4

Max nTPM: 46.4
Min nTPM: 30.3
Sample A Female 46.4
Sample B Female 30.3
Sample C Male 40.3
Sample D Male 33.7
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 49.5
Min nTPM: 35.1
Sample A Female 46.1
Sample B Female 35.1
Sample C Male 49.5
Sample D Male 40.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 111.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.9
Samples: 4

Max nTPM: 114.6
Min nTPM: 109.5
Sample A Male 110.3
Sample B Male 113.0
Sample C Female 114.6
Sample D Female 109.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
75695663 Antisense, RP_060518_04_D02, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.