MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:89.5 nTPM
HPA:89.5 nTPM
GTEx:117.2 nTPM
FANTOM5:171.9 Scaled Tags Per Million
Pig:126.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.4
2019 Male, age 18, unknown 88.0
1870 Female, age 42, unknown 85.5
1830 Male, age 51, unknown 84.1
2411 Female, age 72, unknown 84.1
2828 Female, age 72, unknown 83.9
1833 Male, age 53, unknown 83.2
2666 Male, age 74, left hemisphere 79.3
1827 Male, age 72, unknown 78.8
2219 Male, age 76, both hemispheres 75.6
2586 Male, age 75, left hemisphere 71.5
Dorsal raphe nucleus
nTPM: 84.3
2298 Female, age 72, unknown 88.0
1828 Male, age 53, unknown 85.0
2750 Male, age 76, both hemispheres 84.9
2016 Female, age 72, unknown 84.8
2047 Male, age 72, unknown 78.9
Inferior colliculus
nTPM: 83.2
2097 Female, age 72, unknown 86.0
1890 Male, age 53, unknown 84.1
1848 Female, age 42, unknown 82.2
2849 Male, age 72, unknown 80.3
Median raphe nucleus
nTPM: 82.4
2220 Male, age 76, midline 82.4
Pedunculopontine tegmental nucleus
nTPM: 89.5
2338 Male, age 61, both hemispheres 97.8
2334 Male, age 80, both hemispheres 89.8
1921 Female, age 85, both hemispheres 81.0
Periaquaductal grey, anterior
nTPM: 82.0
2502 Female, age 75, unknown 86.4
1795 Male, age 51, unknown 80.0
1947 Male, age 18, unknown 79.5
Periaquaductal grey, dorsal
nTPM: 82.3
2850 Male, age 76, both hemispheres 85.4
1831 Male, age 72, unknown 82.5
2464 Female, age 72, unknown 81.6
1840 Male, age 53, unknown 79.6
Periaquaductal grey, lateral
nTPM: 83.7
2272 Male, age 74, both hemispheres 86.1
2140 Male, age 76, both hemispheres 84.0
2053 Male, age 18, unknown 81.0
Pretectal area
nTPM: 82.6
2316 Male, age 76, right hemisphere 86.9
2224 Female, age 72, unknown 85.3
2273 Male, age 74, both hemispheres 85.3
1817 Female, age 42, unknown 85.2
2667 Female, age 75, unknown 83.0
1944 Female, age 72, unknown 82.8
2007 Male, age 72, unknown 82.7
1815 Male, age 53, unknown 81.9
2825 Male, age 18, unknown 80.4
1816 Male, age 51, unknown 79.4
2407 Male, age 75, both hemispheres 75.6
Red nucleus
nTPM: 86.6
1821 Female, age 72, unknown 92.3
1954 Female, age 42, unknown 91.7
1865 Male, age 51, unknown 89.8
1904 Male, age 53, unknown 88.7
2503 Female, age 72, unknown 88.4
2227 Male, age 72, unknown 88.0
2823 Male, age 76, right hemisphere 88.0
2769 Male, age 72, unknown 86.6
2785 Male, age 18, unknown 85.2
2725 Female, age 75, unknown 83.7
2588 Male, age 74, left hemisphere 81.7
2584 Male, age 75, left hemisphere 75.2
Substantia nigra
nTPM: 83.9
2665 Male, age 74, both hemispheres 87.4
2241 Male, age 72, unknown 86.4
2699 Male, age 18, unknown 86.4
1851 Male, age 51, unknown 86.1
2409 Female, age 72, unknown 85.4
1889 Female, age 72, unknown 82.8
2590 Female, age 75, unknown 82.8
1916 Female, age 42, unknown 82.1
1941 Male, age 53, unknown 80.7
2583 Male, age 75, right hemisphere 78.7
Superior colliculus
nTPM: 81.5
1913 Female, age 42, unknown 86.5
1995 Male, age 72, unknown 86.4
2587 Male, age 74, left hemisphere 85.6
2087 Female, age 72, unknown 83.3
1895 Male, age 76, right hemisphere 81.8
1839 Male, age 51, unknown 80.9
1796 Male, age 53, unknown 80.0
2261 Male, age 18, unknown 79.6
2668 Female, age 75, unknown 79.0
2664 Male, age 75, both hemispheres 72.0
Ventral tegmental area
nTPM: 84.5
2218 Male, age 76, both hemispheres 86.3
2410 Female, age 72, unknown 85.3
2021 Male, age 53, unknown 85.0
1915 Female, age 42, unknown 84.8
2223 Female, age 72, unknown 84.6
1942 Male, age 51, unknown 80.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 117.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.2
Samples: 139

Max nTPM: 320.0
Min nTPM: 31.4
Std nTPM: 50.7
Median nTPM: 105.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 320.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 275.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 271.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 259.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 241.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 235.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 232.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 231.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 224.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 221.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 193.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.9
FF:10158-103A5 76 years, female 171.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.3
Pig sample Sample description nTPM
Midbrain
nTPM: 98.5
Samples: 4

Max nTPM: 111.1
Min nTPM: 84.4
Sample A Female 109.8
Sample B Female 84.4
Sample C Male 111.1
Sample D Male 88.7
Periaqueductal gray
nTPM: 80.3
Samples: 3

Max nTPM: 88.7
Min nTPM: 71.4
Sample B Female 80.8
Sample C Male 88.7
Sample D Male 71.4
Substantia nigra
nTPM: 93.8
Samples: 4

Max nTPM: 109.0
Min nTPM: 72.4
Sample A Female 109.0
Sample B Female 104.7
Sample C Male 89.0
Sample D Male 72.4
Superior colliculi
nTPM: 126.3
Samples: 4

Max nTPM: 166.3
Min nTPM: 98.6
Sample A Female 130.0
Sample B Female 166.3
Sample C Male 110.3
Sample D Male 98.6

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