MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.6 nTPM
HPA:58.6 nTPM
GTEx:63.7 nTPM
FANTOM5:52.3 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:25.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.7
2411 Female, age 72, unknown 59.0
1870 Female, age 42, unknown 55.9
1827 Male, age 72, unknown 53.8
1833 Male, age 53, unknown 53.3
1830 Male, age 51, unknown 51.5
2828 Female, age 72, unknown 51.3
2219 Male, age 76, both hemispheres 49.5
2019 Male, age 18, unknown 48.2
2666 Male, age 74, left hemisphere 48.1
2586 Male, age 75, left hemisphere 45.9
Dorsal raphe nucleus
nTPM: 55.9
2298 Female, age 72, unknown 60.7
2750 Male, age 76, both hemispheres 57.1
2047 Male, age 72, unknown 55.4
2016 Female, age 72, unknown 53.3
1828 Male, age 53, unknown 52.9
Inferior colliculus
nTPM: 51.9
2097 Female, age 72, unknown 53.9
1848 Female, age 42, unknown 52.1
2849 Male, age 72, unknown 51.5
1890 Male, age 53, unknown 50.3
Median raphe nucleus
nTPM: 58.6
2220 Male, age 76, midline 58.6
Pedunculopontine tegmental nucleus
nTPM: 54.3
2334 Male, age 80, both hemispheres 56.9
1921 Female, age 85, both hemispheres 55.0
2338 Male, age 61, both hemispheres 51.1
Periaquaductal grey, anterior
nTPM: 52.7
1947 Male, age 18, unknown 56.3
2502 Female, age 75, unknown 51.0
1795 Male, age 51, unknown 50.7
Periaquaductal grey, dorsal
nTPM: 52.6
1840 Male, age 53, unknown 57.2
2850 Male, age 76, both hemispheres 52.9
2464 Female, age 72, unknown 51.7
1831 Male, age 72, unknown 48.7
Periaquaductal grey, lateral
nTPM: 51.0
2053 Male, age 18, unknown 51.9
2272 Male, age 74, both hemispheres 51.0
2140 Male, age 76, both hemispheres 50.0
Pretectal area
nTPM: 51.8
2224 Female, age 72, unknown 57.7
2825 Male, age 18, unknown 55.9
2273 Male, age 74, both hemispheres 54.4
2667 Female, age 75, unknown 53.9
1815 Male, age 53, unknown 50.4
1817 Female, age 42, unknown 50.2
2316 Male, age 76, right hemisphere 50.1
2007 Male, age 72, unknown 49.8
1944 Female, age 72, unknown 49.7
1816 Male, age 51, unknown 49.0
2407 Male, age 75, both hemispheres 48.5
Red nucleus
nTPM: 50.2
1821 Female, age 72, unknown 56.0
2725 Female, age 75, unknown 52.5
1954 Female, age 42, unknown 51.3
1865 Male, age 51, unknown 50.7
2769 Male, age 72, unknown 50.7
1904 Male, age 53, unknown 50.4
2227 Male, age 72, unknown 49.9
2823 Male, age 76, right hemisphere 49.9
2503 Female, age 72, unknown 49.5
2584 Male, age 75, left hemisphere 47.5
2588 Male, age 74, left hemisphere 47.4
2785 Male, age 18, unknown 47.3
Substantia nigra
nTPM: 52.8
2241 Male, age 72, unknown 60.1
1916 Female, age 42, unknown 56.1
1851 Male, age 51, unknown 55.5
2699 Male, age 18, unknown 54.1
1889 Female, age 72, unknown 53.6
2409 Female, age 72, unknown 52.1
1941 Male, age 53, unknown 52.0
2590 Female, age 75, unknown 49.3
2583 Male, age 75, right hemisphere 48.5
2665 Male, age 74, both hemispheres 47.0
Superior colliculus
nTPM: 50.6
2587 Male, age 74, left hemisphere 54.5
1839 Male, age 51, unknown 53.7
1895 Male, age 76, right hemisphere 53.1
1796 Male, age 53, unknown 51.4
2668 Female, age 75, unknown 50.7
1913 Female, age 42, unknown 50.1
2087 Female, age 72, unknown 49.3
1995 Male, age 72, unknown 48.2
2261 Male, age 18, unknown 47.9
2664 Male, age 75, both hemispheres 46.9
Ventral tegmental area
nTPM: 54.1
2410 Female, age 72, unknown 57.5
1915 Female, age 42, unknown 55.7
2218 Male, age 76, both hemispheres 53.8
2223 Female, age 72, unknown 53.5
2021 Male, age 53, unknown 52.5
1942 Male, age 51, unknown 51.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.7
Samples: 139

Max nTPM: 93.4
Min nTPM: 41.9
Std nTPM: 10.2
Median nTPM: 63.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 93.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 91.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 91.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 86.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 85.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 85.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 82.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 80.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 79.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.3
FF:10158-103A5 76 years, female 52.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.9
Pig sample Sample description nTPM
Midbrain
nTPM: 28.9
Samples: 4

Max nTPM: 32.1
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 32.1
Sample C Male 27.6
Sample D Male 31.7
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 36.6
Min nTPM: 26.6
Sample B Female 27.8
Sample C Male 36.6
Sample D Male 26.6
Substantia nigra
nTPM: 33.9
Samples: 4

Max nTPM: 49.7
Min nTPM: 14.9
Sample A Female 49.7
Sample B Female 28.2
Sample C Male 42.7
Sample D Male 14.9
Superior colliculi
nTPM: 25.8
Samples: 4

Max nTPM: 31.7
Min nTPM: 17.7
Sample A Female 31.7
Sample B Female 17.7
Sample C Male 28.6
Sample D Male 25.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 26.9
Min nTPM: 24.2
Sample A Male 26.4
Sample B Male 26.9
Sample C Female 24.2
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68637455 Antisense, RP_050125_02_H11, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.