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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:97.9 nTPM
HPA:97.9 nTPM
GTEx:130.7 nTPM
FANTOM5:122.5 Scaled Tags Per Million
Pig:120.4 nTPM
Mouse:458.1 nTPM
Allen mouse:21.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 97.9
Sample id Sample description nTPM
Amygdala
nTPM: 84.2
1987 Female, age 91, left hemisphere 93.2
2514 Male, age 75, right hemisphere 87.4
2517 Female, age 94, left hemisphere 85.2
2814 Male, age 76, right hemisphere 83.8
2695 Female, age 67, right hemisphere 71.2
Basal amygdala
nTPM: 81.9
2110 Male, age 80, left hemisphere 94.0
2243 Female, age 91, right hemisphere 92.4
2685 Female, age 94, left hemisphere 85.1
1955 Male, age 76, both hemispheres 83.6
2609 Male, age 75, right hemisphere 70.1
2827 Female, age 67, right hemisphere 66.5
Central amygdala
nTPM: 83.3
2239 Male, age 80, left hemisphere 96.3
2701 Female, age 91, right hemisphere 82.2
1905 Male, age 76, both hemispheres 82.1
2826 Female, age 94, left hemisphere 79.5
2515 Male, age 75, right hemisphere 76.3
Corticomedial amygdala
nTPM: 87.3
2829 Male, age 80, left hemisphere 102.5
2429 Female, age 94, left hemisphere 96.4
2242 Female, age 91, right hemisphere 86.8
2240 Male, age 76, both hemispheres 84.4
2428 Male, age 75, right hemisphere 76.8
2535 Female, age 67, right hemisphere 76.8
Lateral amygdala
nTPM: 79.6
2534 Female, age 94, left hemisphere 88.7
1883 Male, age 76, both hemispheres 87.3
2255 Female, age 91, right hemisphere 79.9
2516 Male, age 75, right hemisphere 77.3
2256 Male, age 80, left hemisphere 76.8
2830 Female, age 67, right hemisphere 67.5
Stria terminalis, bed nucleus
nTPM: 97.9
1974 Female, age 91, both hemispheres 103.5
2486 Female, age 94, both hemispheres 100.6
2201 Male, age 74, unknown 89.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 130.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 130.7
Samples: 152

Max nTPM: 255.0
Min nTPM: 44.3
Std nTPM: 38.6
Median nTPM: 130.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 255.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 238.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 236.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 219.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 208.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 201.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 201.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 201.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 196.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 196.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 193.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 189.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 187.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 187.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 185.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 183.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 182.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 180.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 170.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 170.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 170.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 166.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 166.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 166.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 165.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 164.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 164.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 161.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 159.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 158.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 158.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 158.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 156.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 156.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 156.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 154.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 153.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 151.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 150.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 149.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 149.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 149.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 148.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 148.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 147.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 146.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 146.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 146.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 145.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 144.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 143.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 143.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 143.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 143.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 142.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 142.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 141.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 141.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 141.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 140.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 140.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 139.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 138.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 137.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 136.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 136.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 135.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 134.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 132.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 131.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 131.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 130.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 127.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 126.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 125.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 124.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 124.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 124.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 123.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 123.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 122.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 122.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 122.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 119.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 118.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 117.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 115.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 113.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 113.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 113.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 112.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 112.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 112.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 112.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 111.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 111.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 110.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 110.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 109.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 106.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 105.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 105.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 104.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 104.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 104.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 103.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 103.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 103.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 102.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 101.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 100.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 100.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 99.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 97.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 90.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 87.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 86.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 84.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 84.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 82.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 82.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 81.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 80.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 80.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 77.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 77.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 73.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 68.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 66.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 62.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 60.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 55.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 44.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 122.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 122.5
FF:10151-102I7 76 years, female 122.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.4
Pig sample Sample description nTPM
Amygdala
nTPM: 120.4
Samples: 4

Max nTPM: 174.1
Min nTPM: 91.2
Sample A Female 174.1
Sample B Female 101.8
Sample C Male 91.2
Sample D Male 114.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 458.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 458.2
Samples: 4

Max nTPM: 502.3
Min nTPM: 365.8
Sample A Male 502.3
Sample B Male 474.5
Sample C Female 365.8
Sample D Female 490.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.5
77454574 Antisense, RP_070129_01_A03, Mouse strain C57BL/6J (56 days, male) 31.6
2478 Antisense, RP_Baylor_103188, Mouse strain C57BL/6J (56 days, male) 21.3
2479 Antisense, RP_Baylor_103188, Mouse strain C57BL/6J (56 days, male) 14.7
797 Antisense, RP_040324_01_A05, Mouse strain C57BL/6J (56 days, male) 11.5

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