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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4.7 nTPM
HPA:4.7 nTPM
GTEx:92.2 nTPM
FANTOM5:119.6 Scaled Tags Per Million
Pig:68.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 4.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1.6
2194 Female, age 79, both hemispheres 8.3
1981 Female, age 72, midline 0.0
2048 Male, age 55, midline 0.0
2565 Male, age 75, midline 0.0
2816 Male, age 47, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 4.7
2297 Male, age 75, both hemispheres 28.6
1877 Male, age 55, unknown 0.0
2069 Male, age 47, both hemispheres 0.0
2173 Female, age 72, unknown 0.0
2296 Male, age 66, both hemispheres 0.0
2721 Male, age 90, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 0.7
2820 Female, age 79, both hemispheres 4.2
2068 Male, age 55, unknown 0.0
2098 Female, age 72, unknown 0.0
2295 Male, age 66, both hemispheres 0.0
2480 Male, age 75, both hemispheres 0.0
2809 Male, age 90, both hemispheres 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 92.2
Samples: 159

Max nTPM: 287.3
Min nTPM: 17.9
Std nTPM: 41.7
Median nTPM: 85.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 287.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 262.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 236.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 221.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 177.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 174.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 164.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 158.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 151.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 151.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 146.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 146.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 145.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 143.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 141.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 140.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 140.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 138.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 138.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 138.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 136.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 136.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 133.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 133.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 132.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 131.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 129.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 128.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 128.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 128.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 127.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 125.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 123.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 122.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 121.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 116.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 114.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 111.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 109.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 107.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 107.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 106.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 105.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 104.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 103.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 103.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 102.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 102.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 102.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 102.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 101.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 100.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 100.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 100.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 99.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 98.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 97.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 95.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 94.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 94.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 93.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 93.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 93.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 93.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 92.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 91.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 91.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 90.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 89.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 87.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 87.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 86.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 85.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 85.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 85.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 85.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 85.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 84.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 84.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 84.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 83.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 82.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 81.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 81.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 81.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 80.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 80.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 80.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 79.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 79.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 79.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 78.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 78.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 78.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 77.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 76.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 76.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 76.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 76.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 76.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 75.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 75.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 74.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 74.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 72.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 71.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 70.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 70.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 68.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 67.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 66.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 66.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 65.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 63.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 62.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 61.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 61.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 61.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 60.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 60.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 59.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 59.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 59.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 58.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 58.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 57.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 56.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 56.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 55.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 55.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 53.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 52.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 52.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 51.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 51.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 51.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 50.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 50.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 50.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 50.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 48.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 46.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 46.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 46.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 46.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 41.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 39.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 35.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 35.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 35.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 25.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 22.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 21.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 17.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 119.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.6
FF:10181-103D1 60 years, female 186.4
FF:10159-103A6 76 years, female 52.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 65.1
Samples: 4

Max nTPM: 115.9
Min nTPM: 19.6
Sample A Female 115.9
Sample B Female 40.7
Sample C Male 19.6
Sample D Male 84.3
Ventral spinal cord
nTPM: 68.8
Samples: 4

Max nTPM: 81.0
Min nTPM: 44.9
Sample A Female 81.0
Sample B Female 77.8
Sample C Male 71.4
Sample D Male 44.9

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