MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA:25.9 nTPM
GTEx:35.2 nTPM
FANTOM5:65.2 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:103.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.2
2411 Female, age 72, unknown 27.1
2019 Male, age 18, unknown 27.0
1870 Female, age 42, unknown 26.9
2219 Male, age 76, both hemispheres 24.6
1830 Male, age 51, unknown 24.1
1833 Male, age 53, unknown 23.8
1827 Male, age 72, unknown 22.9
2828 Female, age 72, unknown 22.2
2666 Male, age 74, left hemisphere 22.0
2586 Male, age 75, left hemisphere 21.9
Dorsal raphe nucleus
nTPM: 25.7
2298 Female, age 72, unknown 26.8
2750 Male, age 76, both hemispheres 26.0
1828 Male, age 53, unknown 25.6
2016 Female, age 72, unknown 25.2
2047 Male, age 72, unknown 25.0
Inferior colliculus
nTPM: 24.4
2097 Female, age 72, unknown 25.2
1890 Male, age 53, unknown 24.9
2849 Male, age 72, unknown 23.9
1848 Female, age 42, unknown 23.8
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Pedunculopontine tegmental nucleus
nTPM: 25.4
2334 Male, age 80, both hemispheres 25.8
2338 Male, age 61, both hemispheres 25.4
1921 Female, age 85, both hemispheres 25.0
Periaquaductal grey, anterior
nTPM: 22.5
1947 Male, age 18, unknown 22.8
2502 Female, age 75, unknown 22.7
1795 Male, age 51, unknown 21.9
Periaquaductal grey, dorsal
nTPM: 23.1
1840 Male, age 53, unknown 24.3
2464 Female, age 72, unknown 23.3
1831 Male, age 72, unknown 23.1
2850 Male, age 76, both hemispheres 21.9
Periaquaductal grey, lateral
nTPM: 23.5
2272 Male, age 74, both hemispheres 25.6
2053 Male, age 18, unknown 22.7
2140 Male, age 76, both hemispheres 22.1
Pretectal area
nTPM: 25.1
2224 Female, age 72, unknown 27.6
1817 Female, age 42, unknown 27.3
2273 Male, age 74, both hemispheres 26.3
2667 Female, age 75, unknown 25.9
1944 Female, age 72, unknown 25.3
2407 Male, age 75, both hemispheres 25.0
1815 Male, age 53, unknown 24.7
2007 Male, age 72, unknown 24.4
1816 Male, age 51, unknown 23.9
2316 Male, age 76, right hemisphere 23.2
2825 Male, age 18, unknown 22.9
Red nucleus
nTPM: 25.7
1821 Female, age 72, unknown 28.2
1865 Male, age 51, unknown 27.6
2725 Female, age 75, unknown 27.0
2785 Male, age 18, unknown 27.0
1954 Female, age 42, unknown 26.2
1904 Male, age 53, unknown 26.1
2769 Male, age 72, unknown 25.4
2503 Female, age 72, unknown 25.3
2227 Male, age 72, unknown 24.6
2823 Male, age 76, right hemisphere 24.0
2584 Male, age 75, left hemisphere 23.7
2588 Male, age 74, left hemisphere 23.7
Substantia nigra
nTPM: 25.9
2241 Male, age 72, unknown 28.7
1851 Male, age 51, unknown 28.4
2409 Female, age 72, unknown 27.3
1889 Female, age 72, unknown 26.2
1916 Female, age 42, unknown 26.0
2699 Male, age 18, unknown 26.0
1941 Male, age 53, unknown 24.9
2665 Male, age 74, both hemispheres 24.4
2590 Female, age 75, unknown 23.6
2583 Male, age 75, right hemisphere 23.5
Superior colliculus
nTPM: 23.3
1913 Female, age 42, unknown 26.3
2587 Male, age 74, left hemisphere 25.5
1995 Male, age 72, unknown 25.2
2668 Female, age 75, unknown 23.2
1895 Male, age 76, right hemisphere 22.9
1796 Male, age 53, unknown 22.8
1839 Male, age 51, unknown 22.7
2087 Female, age 72, unknown 22.4
2261 Male, age 18, unknown 21.8
2664 Male, age 75, both hemispheres 20.3
Ventral tegmental area
nTPM: 25.9
2223 Female, age 72, unknown 28.2
2410 Female, age 72, unknown 26.8
1915 Female, age 42, unknown 26.0
2021 Male, age 53, unknown 25.9
1942 Male, age 51, unknown 24.3
2218 Male, age 76, both hemispheres 24.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 139

Max nTPM: 56.9
Min nTPM: 17.8
Std nTPM: 6.9
Median nTPM: 34.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 56.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 52.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 48.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 48.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 47.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 46.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 46.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 46.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 46.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.2
FF:10158-103A5 76 years, female 65.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.9
Pig sample Sample description nTPM
Midbrain
nTPM: 29.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 23.8
Sample A Female 38.4
Sample B Female 28.1
Sample C Male 29.2
Sample D Male 23.8
Periaqueductal gray
nTPM: 26.4
Samples: 3

Max nTPM: 28.5
Min nTPM: 23.9
Sample B Female 26.8
Sample C Male 28.5
Sample D Male 23.9
Substantia nigra
nTPM: 28.4
Samples: 4

Max nTPM: 31.2
Min nTPM: 25.6
Sample A Female 31.2
Sample B Female 29.2
Sample C Male 25.6
Sample D Male 27.4
Superior colliculi
nTPM: 29.0
Samples: 4

Max nTPM: 32.2
Min nTPM: 24.6
Sample A Female 30.4
Sample B Female 32.2
Sample C Male 28.7
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 103.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.7
Samples: 4

Max nTPM: 105.0
Min nTPM: 102.3
Sample A Male 102.3
Sample B Male 103.1
Sample C Female 104.3
Sample D Female 105.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
512775 Antisense, RP_040809_02_E03, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.