MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:257.1 nTPM
HPA:257.1 nTPM
GTEx:343.8 nTPM
FANTOM5:83.1 Scaled Tags Per Million
Pig:490.7 nTPM
Mouse:8.9 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 257.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.3
2586 Male, age 75, left hemisphere 324.3
2666 Male, age 74, left hemisphere 191.2
2828 Female, age 72, unknown 140.2
1827 Male, age 72, unknown 103.9
1870 Female, age 42, unknown 76.9
2219 Male, age 76, both hemispheres 72.6
1833 Male, age 53, unknown 62.0
1830 Male, age 51, unknown 34.3
2411 Female, age 72, unknown 17.1
2019 Male, age 18, unknown 0.0
Dorsal raphe nucleus
nTPM: 102.0
2047 Male, age 72, unknown 144.7
2298 Female, age 72, unknown 138.5
2750 Male, age 76, both hemispheres 83.6
1828 Male, age 53, unknown 82.4
2016 Female, age 72, unknown 60.7
Inferior colliculus
nTPM: 126.1
2849 Male, age 72, unknown 175.3
1848 Female, age 42, unknown 124.2
2097 Female, age 72, unknown 119.8
1890 Male, age 53, unknown 85.2
Median raphe nucleus
nTPM: 257.1
2220 Male, age 76, midline 257.1
Pedunculopontine tegmental nucleus
nTPM: 84.4
2334 Male, age 80, both hemispheres 143.6
1921 Female, age 85, both hemispheres 107.6
2338 Male, age 61, both hemispheres 1.9
Periaquaductal grey, anterior
nTPM: 156.5
1795 Male, age 51, unknown 177.5
1947 Male, age 18, unknown 175.9
2502 Female, age 75, unknown 116.0
Periaquaductal grey, dorsal
nTPM: 107.2
1840 Male, age 53, unknown 183.1
2850 Male, age 76, both hemispheres 128.2
1831 Male, age 72, unknown 74.4
2464 Female, age 72, unknown 43.0
Periaquaductal grey, lateral
nTPM: 84.8
2140 Male, age 76, both hemispheres 119.3
2272 Male, age 74, both hemispheres 93.5
2053 Male, age 18, unknown 41.6
Pretectal area
nTPM: 75.4
2224 Female, age 72, unknown 177.0
2825 Male, age 18, unknown 154.1
2007 Male, age 72, unknown 98.8
1816 Male, age 51, unknown 86.9
2667 Female, age 75, unknown 85.0
1817 Female, age 42, unknown 79.3
1944 Female, age 72, unknown 75.3
2273 Male, age 74, both hemispheres 31.4
2316 Male, age 76, right hemisphere 21.3
1815 Male, age 53, unknown 20.5
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 31.9
2584 Male, age 75, left hemisphere 162.6
2588 Male, age 74, left hemisphere 51.4
2227 Male, age 72, unknown 46.1
2785 Male, age 18, unknown 43.4
2769 Male, age 72, unknown 42.4
2503 Female, age 72, unknown 27.7
1954 Female, age 42, unknown 9.8
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
2725 Female, age 75, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 60.1
1916 Female, age 42, unknown 123.5
2583 Male, age 75, right hemisphere 111.0
2665 Male, age 74, both hemispheres 108.7
1851 Male, age 51, unknown 64.5
2699 Male, age 18, unknown 61.9
1941 Male, age 53, unknown 61.4
1889 Female, age 72, unknown 60.8
2590 Female, age 75, unknown 9.2
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
Superior colliculus
nTPM: 57.3
2668 Female, age 75, unknown 135.2
1796 Male, age 53, unknown 134.5
1839 Male, age 51, unknown 98.2
2087 Female, age 72, unknown 69.5
2261 Male, age 18, unknown 57.9
2664 Male, age 75, both hemispheres 44.2
2587 Male, age 74, left hemisphere 18.0
1895 Male, age 76, right hemisphere 15.8
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 109.7
2218 Male, age 76, both hemispheres 161.4
1942 Male, age 51, unknown 151.7
1915 Female, age 42, unknown 143.7
2021 Male, age 53, unknown 122.7
2223 Female, age 72, unknown 75.7
2410 Female, age 72, unknown 3.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 343.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 343.8
Samples: 139

Max nTPM: 834.3
Min nTPM: 43.2
Std nTPM: 173.3
Median nTPM: 334.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 834.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 803.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 794.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 712.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 692.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 676.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 655.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 648.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 646.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 633.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 632.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.1
FF:10158-103A5 76 years, female 83.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 490.7
Pig sample Sample description nTPM
Midbrain
nTPM: 474.7
Samples: 4

Max nTPM: 700.9
Min nTPM: 273.0
Sample A Female 273.0
Sample B Female 386.7
Sample C Male 538.1
Sample D Male 700.9
Periaqueductal gray
nTPM: 411.4
Samples: 3

Max nTPM: 492.3
Min nTPM: 370.1
Sample B Female 371.8
Sample C Male 492.3
Sample D Male 370.1
Substantia nigra
nTPM: 393.2
Samples: 4

Max nTPM: 698.9
Min nTPM: 184.8
Sample A Female 698.9
Sample B Female 334.4
Sample C Male 354.5
Sample D Male 184.8
Superior colliculi
nTPM: 490.7
Samples: 4

Max nTPM: 772.5
Min nTPM: 293.4
Sample A Female 772.5
Sample B Female 293.4
Sample C Male 417.9
Sample D Male 478.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 15.1
Min nTPM: 5.7
Sample A Male 15.1
Sample B Male 7.8
Sample C Female 5.7
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
79360249 Antisense, RP_071018_01_E06, Mouse strain C57BL/6J (56 days, male) 21.0
777 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 7.7
778 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.