MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.1 nTPM
HPA:95.1 nTPM
GTEx:40.1 nTPM
FANTOM5:242.1 Scaled Tags Per Million
Pig:87.0 nTPM
Mouse:719.1 nTPM
Allen mouse:20.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.0
2019 Male, age 18, unknown 99.6
2411 Female, age 72, unknown 91.4
1827 Male, age 72, unknown 88.4
2666 Male, age 74, left hemisphere 80.1
1870 Female, age 42, unknown 79.9
2828 Female, age 72, unknown 79.4
1833 Male, age 53, unknown 77.7
2219 Male, age 76, both hemispheres 76.0
1830 Male, age 51, unknown 74.3
2586 Male, age 75, left hemisphere 73.4
Dorsal raphe nucleus
nTPM: 86.3
2298 Female, age 72, unknown 101.9
1828 Male, age 53, unknown 86.7
2047 Male, age 72, unknown 84.0
2750 Male, age 76, both hemispheres 83.9
2016 Female, age 72, unknown 75.0
Inferior colliculus
nTPM: 95.1
2097 Female, age 72, unknown 122.0
1890 Male, age 53, unknown 96.5
1848 Female, age 42, unknown 87.2
2849 Male, age 72, unknown 74.6
Median raphe nucleus
nTPM: 91.2
2220 Male, age 76, midline 91.2
Pedunculopontine tegmental nucleus
nTPM: 92.5
2334 Male, age 80, both hemispheres 95.4
1921 Female, age 85, both hemispheres 91.7
2338 Male, age 61, both hemispheres 90.4
Periaquaductal grey, anterior
nTPM: 83.5
2502 Female, age 75, unknown 84.9
1947 Male, age 18, unknown 83.2
1795 Male, age 51, unknown 82.3
Periaquaductal grey, dorsal
nTPM: 77.5
2464 Female, age 72, unknown 81.8
1831 Male, age 72, unknown 79.3
1840 Male, age 53, unknown 75.9
2850 Male, age 76, both hemispheres 73.0
Periaquaductal grey, lateral
nTPM: 76.2
2272 Male, age 74, both hemispheres 80.7
2140 Male, age 76, both hemispheres 74.2
2053 Male, age 18, unknown 73.6
Pretectal area
nTPM: 93.8
1817 Female, age 42, unknown 115.5
2007 Male, age 72, unknown 113.5
1816 Male, age 51, unknown 112.9
1944 Female, age 72, unknown 107.8
1815 Male, age 53, unknown 94.2
2667 Female, age 75, unknown 93.4
2224 Female, age 72, unknown 85.6
2273 Male, age 74, both hemispheres 83.9
2316 Male, age 76, right hemisphere 78.3
2825 Male, age 18, unknown 74.9
2407 Male, age 75, both hemispheres 72.2
Red nucleus
nTPM: 85.6
1821 Female, age 72, unknown 102.2
2785 Male, age 18, unknown 96.8
2725 Female, age 75, unknown 92.1
1954 Female, age 42, unknown 88.7
2503 Female, age 72, unknown 86.5
1865 Male, age 51, unknown 83.9
2769 Male, age 72, unknown 82.4
2823 Male, age 76, right hemisphere 82.4
2227 Male, age 72, unknown 81.9
1904 Male, age 53, unknown 81.8
2588 Male, age 74, left hemisphere 76.8
2584 Male, age 75, left hemisphere 71.9
Substantia nigra
nTPM: 91.6
1916 Female, age 42, unknown 107.7
1889 Female, age 72, unknown 103.6
2241 Male, age 72, unknown 102.5
1941 Male, age 53, unknown 97.2
1851 Male, age 51, unknown 95.9
2409 Female, age 72, unknown 94.6
2665 Male, age 74, both hemispheres 84.1
2590 Female, age 75, unknown 78.6
2583 Male, age 75, right hemisphere 75.6
2699 Male, age 18, unknown 75.6
Superior colliculus
nTPM: 82.9
2087 Female, age 72, unknown 105.7
2261 Male, age 18, unknown 91.4
1796 Male, age 53, unknown 88.2
1895 Male, age 76, right hemisphere 83.8
2668 Female, age 75, unknown 83.6
2587 Male, age 74, left hemisphere 80.8
1839 Male, age 51, unknown 77.7
1913 Female, age 42, unknown 77.6
1995 Male, age 72, unknown 74.1
2664 Male, age 75, both hemispheres 66.0
Ventral tegmental area
nTPM: 89.4
2410 Female, age 72, unknown 98.5
1915 Female, age 42, unknown 98.1
2218 Male, age 76, both hemispheres 94.2
1942 Male, age 51, unknown 83.5
2223 Female, age 72, unknown 82.9
2021 Male, age 53, unknown 79.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 139

Max nTPM: 106.2
Min nTPM: 18.0
Std nTPM: 15.5
Median nTPM: 35.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 73.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 73.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 68.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 68.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 66.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 66.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 242.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 242.1
FF:10158-103A5 76 years, female 242.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.0
Pig sample Sample description nTPM
Midbrain
nTPM: 83.2
Samples: 4

Max nTPM: 103.1
Min nTPM: 66.1
Sample A Female 103.1
Sample B Female 66.1
Sample C Male 91.4
Sample D Male 72.1
Periaqueductal gray
nTPM: 58.5
Samples: 3

Max nTPM: 65.0
Min nTPM: 51.0
Sample B Female 59.4
Sample C Male 65.0
Sample D Male 51.0
Substantia nigra
nTPM: 68.5
Samples: 4

Max nTPM: 93.8
Min nTPM: 53.1
Sample A Female 93.8
Sample B Female 54.7
Sample C Male 72.5
Sample D Male 53.1
Superior colliculi
nTPM: 87.0
Samples: 4

Max nTPM: 104.4
Min nTPM: 72.9
Sample A Female 96.1
Sample B Female 72.9
Sample C Male 104.4
Sample D Male 74.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 719.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 719.1
Samples: 4

Max nTPM: 753.2
Min nTPM: 691.9
Sample A Male 722.0
Sample B Male 709.1
Sample C Female 691.9
Sample D Female 753.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.8
69783047 Antisense, RP_050505_04_C05, Mouse strain C57BL/6J (56 days, male) 20.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.