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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:50.2 nTPM
GTEx:58.8 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:19.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 50.2
Sample id Sample description nTPM
Putamen
nTPM: 50.2
2482 Female, age 94, left hemisphere 54.5
2647 Male, age 75, left hemisphere 53.2
1838 Male, age 80, right hemisphere 50.6
1829 Male, age 74, unknown 49.7
1937 Female, age 91, right hemisphere 49.1
2489 Female, age 72, unknown 47.2
2466 Female, age 79, unknown 47.0

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.8
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 58.8
Samples: 205

Max nTPM: 97.5
Min nTPM: 38.8
Std nTPM: 10.4
Median nTPM: 56.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 97.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 95.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 93.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 90.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 89.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 84.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 81.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 80.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 80.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 80.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 78.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 78.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 78.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 76.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 76.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 75.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 75.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 75.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 74.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 73.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 73.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 72.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 72.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 72.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 72.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 71.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 71.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 70.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 70.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 69.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 69.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 69.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 68.9
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 68.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 68.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 68.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 67.8
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 67.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 66.9
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 66.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 66.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 65.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 65.0
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 64.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 64.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 64.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 64.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 63.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 63.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 63.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 63.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 63.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 63.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 63.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 63.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 63.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 62.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 62.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 62.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 62.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 61.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 61.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 61.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 61.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 61.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 61.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 61.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 61.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 61.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 60.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 60.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 60.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 60.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 60.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 59.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 59.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 59.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 59.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 59.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 58.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 58.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 58.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 58.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 58.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 58.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 58.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 58.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 58.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 58.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 58.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 58.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 58.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 58.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 58.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 58.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 57.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 57.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 57.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 57.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 57.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 56.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 56.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 56.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 56.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 56.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 56.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 56.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 56.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 56.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 56.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 56.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 55.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 55.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 55.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 55.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 55.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 55.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 55.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 54.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 54.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 54.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 54.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 54.8
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 54.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 54.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 54.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 54.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 54.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 54.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 54.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 54.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 54.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 54.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 53.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 53.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 53.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 53.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 53.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 53.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 53.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 53.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 53.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 53.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 53.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 53.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 52.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 52.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 52.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 52.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 52.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 52.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 51.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 51.5
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 51.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 51.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 51.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 50.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 50.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 50.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 50.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 50.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 50.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 50.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 50.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 50.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 50.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 50.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 50.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 49.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 49.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 49.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 49.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 49.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 49.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 49.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 48.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 48.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 48.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 48.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 48.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 48.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 48.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 48.2
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 47.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 47.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 47.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 47.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 46.8
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 46.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 46.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 46.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 46.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 45.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 45.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 45.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 45.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 45.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 44.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 44.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 44.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 44.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 44.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 43.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 43.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 38.8
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 58.2
FF:10176-103C5 60 years, female 58.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.5
Pig sample Sample description nTPM
Putamen
nTPM: 19.5
Samples: 4

Max nTPM: 23.0
Min nTPM: 15.0
Sample A Female 23.0
Sample B Female 15.0
Sample C Male 20.4
Sample D Male 19.4

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