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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:180.0 nTPM
HPA:65.5 nTPM
GTEx:180.0 nTPM
FANTOM5:87.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA053417Antibody CAB022360
Glandular cells Not detectedNot detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 65.5
overview
Male, age 65
Small intestine sample 232
nTPM: 46.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 59.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 75.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 80.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 180.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 180.0
Samples: 187

Max nTPM: 1779.1
Min nTPM: 33.8
Std nTPM: 178.4
Median nTPM: 133.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1779.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 931.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 923.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 649.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 564.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 516.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 492.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 446.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 438.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 435.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 420.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 416.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 389.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 373.6
GTEX-1192X-2526-SM-59868 50-59 years, male 367.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 364.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 348.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 330.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 316.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 312.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 312.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 308.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 307.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 304.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 298.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 297.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 287.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 285.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 283.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 276.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 270.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 265.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 262.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 253.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 252.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 247.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 246.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 246.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 240.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 237.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 236.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 230.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 228.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 227.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 225.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 220.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 219.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 213.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 209.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 208.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 208.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 205.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 204.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 203.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 198.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 194.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 193.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 190.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 186.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 181.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 181.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 178.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 178.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 178.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 176.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 171.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 171.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 171.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 171.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 166.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 166.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 163.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 162.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 157.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 157.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 157.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 157.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 154.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 154.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 153.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 150.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 148.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 146.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 146.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 142.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 142.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 142.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 140.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 139.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 138.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 136.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 136.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 135.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 133.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 131.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 131.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 130.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 126.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 125.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 124.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 124.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 122.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 120.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 118.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 114.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 113.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 111.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 110.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 110.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 109.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 109.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 108.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 108.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 107.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 105.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 104.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 103.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 103.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 103.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 101.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 99.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 99.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 97.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 96.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 96.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 96.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 94.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 93.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 93.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 93.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 91.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 91.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 90.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 90.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 89.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 88.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 88.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 86.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 86.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 86.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 86.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 83.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 81.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 81.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 81.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 81.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 80.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 80.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 79.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 79.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 79.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 78.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 77.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 76.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 74.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 74.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 72.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 72.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 70.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 67.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 66.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 66.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 66.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 64.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 64.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 63.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 63.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 62.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 62.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 59.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 58.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 57.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 54.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 54.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 54.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 53.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 50.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 50.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 50.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 49.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 47.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 44.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 43.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 43.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 42.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 36.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 33.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 87.1
FF:10024-101D6 15,40,85 years, mixed 87.1

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