MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:204.8 nTPM
HPA:204.8 nTPM
GTEx:156.0 nTPM
FANTOM5:258.1 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:16.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 204.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 188.6
1870 Female, age 42, unknown 203.3
2828 Female, age 72, unknown 200.6
2411 Female, age 72, unknown 200.1
1830 Male, age 51, unknown 195.8
2019 Male, age 18, unknown 195.1
1833 Male, age 53, unknown 188.2
2219 Male, age 76, both hemispheres 179.9
2586 Male, age 75, left hemisphere 176.2
2666 Male, age 74, left hemisphere 174.7
1827 Male, age 72, unknown 171.7
Dorsal raphe nucleus
nTPM: 187.7
2750 Male, age 76, both hemispheres 222.5
2016 Female, age 72, unknown 192.0
1828 Male, age 53, unknown 179.0
2047 Male, age 72, unknown 174.3
2298 Female, age 72, unknown 170.8
Inferior colliculus
nTPM: 185.2
1890 Male, age 53, unknown 202.7
2097 Female, age 72, unknown 184.4
1848 Female, age 42, unknown 178.8
2849 Male, age 72, unknown 175.1
Median raphe nucleus
nTPM: 165.5
2220 Male, age 76, midline 165.5
Pedunculopontine tegmental nucleus
nTPM: 186.1
1921 Female, age 85, both hemispheres 197.1
2334 Male, age 80, both hemispheres 196.0
2338 Male, age 61, both hemispheres 165.0
Periaquaductal grey, anterior
nTPM: 176.3
2502 Female, age 75, unknown 182.5
1947 Male, age 18, unknown 179.7
1795 Male, age 51, unknown 166.7
Periaquaductal grey, dorsal
nTPM: 171.3
2464 Female, age 72, unknown 185.5
2850 Male, age 76, both hemispheres 170.6
1831 Male, age 72, unknown 164.9
1840 Male, age 53, unknown 164.4
Periaquaductal grey, lateral
nTPM: 177.4
2272 Male, age 74, both hemispheres 179.9
2140 Male, age 76, both hemispheres 178.8
2053 Male, age 18, unknown 173.4
Pretectal area
nTPM: 180.1
2316 Male, age 76, right hemisphere 207.4
2667 Female, age 75, unknown 196.1
1817 Female, age 42, unknown 185.7
2007 Male, age 72, unknown 182.8
1815 Male, age 53, unknown 182.4
2273 Male, age 74, both hemispheres 182.0
2224 Female, age 72, unknown 175.1
1944 Female, age 72, unknown 171.7
2825 Male, age 18, unknown 171.6
2407 Male, age 75, both hemispheres 164.0
1816 Male, age 51, unknown 162.6
Red nucleus
nTPM: 204.8
2227 Male, age 72, unknown 220.6
2769 Male, age 72, unknown 220.6
1865 Male, age 51, unknown 217.8
2785 Male, age 18, unknown 216.1
1904 Male, age 53, unknown 215.5
2503 Female, age 72, unknown 214.5
1954 Female, age 42, unknown 211.1
1821 Female, age 72, unknown 206.8
2823 Male, age 76, right hemisphere 203.3
2588 Male, age 74, left hemisphere 188.7
2725 Female, age 75, unknown 175.6
2584 Male, age 75, left hemisphere 167.6
Substantia nigra
nTPM: 177.1
1889 Female, age 72, unknown 188.1
1851 Male, age 51, unknown 185.8
2583 Male, age 75, right hemisphere 183.7
2699 Male, age 18, unknown 181.8
1941 Male, age 53, unknown 173.9
2241 Male, age 72, unknown 173.9
2665 Male, age 74, both hemispheres 172.6
1916 Female, age 42, unknown 172.4
2409 Female, age 72, unknown 172.0
2590 Female, age 75, unknown 166.4
Superior colliculus
nTPM: 187.1
1913 Female, age 42, unknown 217.6
1995 Male, age 72, unknown 210.4
1895 Male, age 76, right hemisphere 200.6
2668 Female, age 75, unknown 200.3
1839 Male, age 51, unknown 185.1
2587 Male, age 74, left hemisphere 183.5
1796 Male, age 53, unknown 174.3
2261 Male, age 18, unknown 172.1
2087 Female, age 72, unknown 168.4
2664 Male, age 75, both hemispheres 158.4
Ventral tegmental area
nTPM: 181.8
2410 Female, age 72, unknown 193.2
1942 Male, age 51, unknown 186.1
1915 Female, age 42, unknown 181.0
2021 Male, age 53, unknown 181.0
2218 Male, age 76, both hemispheres 176.7
2223 Female, age 72, unknown 173.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 156.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.0
Samples: 139

Max nTPM: 519.4
Min nTPM: 52.7
Std nTPM: 71.8
Median nTPM: 137.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 519.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 439.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 428.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 306.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 278.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 273.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 272.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 269.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 269.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 267.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 258.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 258.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 258.1
FF:10158-103A5 76 years, female 258.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.1
Pig sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 67.4
Min nTPM: 21.3
Sample A Female 67.4
Sample B Female 28.9
Sample C Male 27.0
Sample D Male 21.3
Periaqueductal gray
nTPM: 28.0
Samples: 3

Max nTPM: 31.5
Min nTPM: 24.9
Sample B Female 31.5
Sample C Male 27.5
Sample D Male 24.9
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 32.9
Min nTPM: 20.9
Sample A Female 32.9
Sample B Female 20.9
Sample C Male 20.9
Sample D Male 28.4
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 31.8
Min nTPM: 17.7
Sample A Female 31.8
Sample B Female 17.7
Sample C Male 27.3
Sample D Male 25.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 14.1
Sample C Female 17.5
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69114097 Antisense, RP_050317_01_B07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.