BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.0 nTPM
HPA:1.0 nTPM
GTEx:0.9 nTPM
FANTOM5:2.0 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:1.0 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA017172Antibody CAB002216
Glial cells Not detectedNot detected
Neuronal cells HighNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.9
2481 Female, age 94, left hemisphere 1.5
2289 Male, age 61, right hemisphere 1.3
1781 Male, age 74, unknown 0.9
1857 Female, age 85, left hemisphere 0.8
2846 Female, age 79, unknown 0.8
1854 Male, age 80, left hemisphere 0.7
2288 Male, age 75, left hemisphere 0.7
2290 Female, age 72, unknown 0.7
Claustrum
nTPM: 0.6
2292 Female, age 85, both hemispheres 0.9
2491 Male, age 75, both hemispheres 0.8
2645 Female, age 72, unknown 0.8
2196 Female, age 79, unknown 0.7
1956 Male, age 74, unknown 0.6
2198 Male, age 80, both hemispheres 0.6
2284 Female, age 91, both hemispheres 0.5
2392 Female, age 94, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.8
1996 Male, age 80, right hemisphere 1.6
2772 Female, age 79, unknown 0.7
2395 Male, age 75, both hemispheres 0.6
2567 Female, age 72, unknown 0.6
2646 Male, age 61, right hemisphere 0.6
Globus pallidus, internus
nTPM: 0.7
2037 Male, age 80, right hemisphere 1.2
2483 Female, age 94, right hemisphere 0.9
1818 Male, age 74, unknown 0.7
2778 Female, age 91, both hemispheres 0.7
2111 Female, age 85, right hemisphere 0.6
2566 Female, age 72, unknown 0.6
2287 Male, age 75, right hemisphere 0.4
Nucleus accumbens
nTPM: 0.7
2391 Female, age 94, left hemisphere 1.3
2732 Male, age 80, right hemisphere 0.8
1783 Male, age 74, unknown 0.7
1806 Female, age 85, left hemisphere 0.7
1856 Female, age 91, right hemisphere 0.6
2698 Female, age 72, unknown 0.6
2824 Male, age 61, right hemisphere 0.6
2286 Male, age 75, left hemisphere 0.4
Nucleus basalis of Meynert
nTPM: 1.0
2484 Female, age 94, left hemisphere 1.5
2393 Male, age 80, right hemisphere 1.2
2569 Male, age 61, both hemispheres 0.7
2821 Male, age 75, both hemispheres 0.5
Nucleus of the diagonal band
nTPM: 0.7
2775 Male, age 80, right hemisphere 1.3
2029 Male, age 61, right hemisphere 0.6
1812 Female, age 91, both hemispheres 0.5
1979 Male, age 74, unknown 0.5
2195 Female, age 85, both hemispheres 0.5
Olfactory tubercle
nTPM: 0.6
2856 Male, age 75, right hemisphere 0.8
1846 Male, age 80, right hemisphere 0.7
2487 Female, age 94, left hemisphere 0.6
1998 Female, age 91, both hemispheres 0.5
Putamen
nTPM: 0.7
2482 Female, age 94, left hemisphere 1.1
2466 Female, age 79, unknown 0.9
1829 Male, age 74, unknown 0.8
2489 Female, age 72, unknown 0.7
1838 Male, age 80, right hemisphere 0.6
1937 Female, age 91, right hemisphere 0.4
2647 Male, age 75, left hemisphere 0.4
Septal nuclei
nTPM: 0.7
2394 Male, age 61, left hemisphere 1.4
2199 Male, age 80, right hemisphere 0.7
2629 Female, age 94, right hemisphere 0.7
1960 Male, age 74, unknown 0.6
2031 Female, age 72, unknown 0.6
2059 Female, age 85, both hemispheres 0.6
2009 Female, age 91, both hemispheres 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 5.3
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 5.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 2.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 2.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 6.7
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 0.6
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 6.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 4.5
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 4.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 3.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 3.2
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 3.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 2.9
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 2.9
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 2.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 2.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 2.4
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Brain - Putamen (basal ganglia)
Average nTPM: 0.9
Samples: 205

Max nTPM: 6.9
Min nTPM: 0.1
Std nTPM: 0.7
Median nTPM: 0.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 6.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 3.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 3.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 3.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 3.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 2.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 2.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 2.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 2.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.0
FF:10164-103B2 76 years, female 1.0
Globus pallidus
Scaled Tags Per Million: 2.0
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 1.8
Nucleus accumbens
Scaled Tags Per Million: 1.0
FF:10037-101F1 23-56 years, mixed 1.0
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral pallidum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.2
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.7
Sample A Male 0.9
Sample B Male 1.4
Sample C Female 0.7
Sample D Female 1.1
Ventral forebrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Male 0.6
Sample B Male 0.8
Sample C Female 0.5
Sample D Female 0.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
75826582 Antisense, RP_060601_01_B11, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
75826582 Antisense, RP_060601_01_B11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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