BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.3 nTPM
HPA:44.3 nTPM
GTEx:14.5 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:4.7 nTPM
Mouse:7.3 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.0
1781 Male, age 74, unknown 44.3
2289 Male, age 61, right hemisphere 43.4
1854 Male, age 80, left hemisphere 42.3
2288 Male, age 75, left hemisphere 41.7
1857 Female, age 85, left hemisphere 41.5
2290 Female, age 72, unknown 41.2
2846 Female, age 79, unknown 40.9
2481 Female, age 94, left hemisphere 40.6
Claustrum
nTPM: 44.3
2568 Male, age 61, both hemispheres 45.9
2645 Female, age 72, unknown 45.8
2491 Male, age 75, both hemispheres 45.6
2284 Female, age 91, both hemispheres 44.5
1956 Male, age 74, unknown 44.1
2198 Male, age 80, both hemispheres 44.1
2292 Female, age 85, both hemispheres 43.0
2392 Female, age 94, both hemispheres 43.0
2196 Female, age 79, unknown 42.6
Globus pallidus, externus
nTPM: 41.2
2646 Male, age 61, right hemisphere 43.0
2567 Female, age 72, unknown 42.0
2772 Female, age 79, unknown 40.6
2395 Male, age 75, both hemispheres 40.5
1996 Male, age 80, right hemisphere 39.6
Globus pallidus, internus
nTPM: 40.8
2778 Female, age 91, both hemispheres 42.5
2111 Female, age 85, right hemisphere 41.1
1818 Male, age 74, unknown 40.9
2566 Female, age 72, unknown 40.9
2483 Female, age 94, right hemisphere 40.4
2037 Male, age 80, right hemisphere 40.1
2287 Male, age 75, right hemisphere 39.9
Nucleus accumbens
nTPM: 41.8
2286 Male, age 75, left hemisphere 42.5
1783 Male, age 74, unknown 42.3
2824 Male, age 61, right hemisphere 42.3
2391 Female, age 94, left hemisphere 41.9
2698 Female, age 72, unknown 41.9
2732 Male, age 80, right hemisphere 41.7
1806 Female, age 85, left hemisphere 41.6
1856 Female, age 91, right hemisphere 40.7
Nucleus basalis of Meynert
nTPM: 41.4
2569 Male, age 61, both hemispheres 42.6
2484 Female, age 94, left hemisphere 41.9
2393 Male, age 80, right hemisphere 40.6
2821 Male, age 75, both hemispheres 40.4
Nucleus of the diagonal band
nTPM: 42.8
2029 Male, age 61, right hemisphere 44.8
2195 Female, age 85, both hemispheres 44.4
2775 Male, age 80, right hemisphere 43.5
1812 Female, age 91, both hemispheres 41.7
1979 Male, age 74, unknown 39.5
Olfactory tubercle
nTPM: 44.3
1846 Male, age 80, right hemisphere 45.0
2856 Male, age 75, right hemisphere 44.5
2487 Female, age 94, left hemisphere 44.0
1998 Female, age 91, both hemispheres 43.6
Putamen
nTPM: 41.3
1829 Male, age 74, unknown 42.1
1838 Male, age 80, right hemisphere 41.7
2647 Male, age 75, left hemisphere 41.6
1937 Female, age 91, right hemisphere 41.2
2466 Female, age 79, unknown 41.0
2489 Female, age 72, unknown 40.9
2482 Female, age 94, left hemisphere 40.8
Septal nuclei
nTPM: 43.3
2629 Female, age 94, right hemisphere 45.9
2031 Female, age 72, unknown 44.9
1960 Male, age 74, unknown 44.4
2059 Female, age 85, both hemispheres 44.0
2394 Male, age 61, left hemisphere 42.9
2009 Female, age 91, both hemispheres 42.1
2199 Male, age 80, right hemisphere 39.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.0
Samples: 246

Max nTPM: 37.5
Min nTPM: 0.0
Std nTPM: 6.1
Median nTPM: 12.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 37.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 36.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 30.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 30.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 27.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 27.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 27.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 25.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 24.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 24.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 23.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.5
Samples: 246

Max nTPM: 75.0
Min nTPM: 0.6
Std nTPM: 10.0
Median nTPM: 11.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 75.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 51.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 49.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 49.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 47.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 42.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 39.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 37.4
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 37.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 36.6
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 34.9
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Brain - Putamen (basal ganglia)
Average nTPM: 14.1
Samples: 205

Max nTPM: 44.5
Min nTPM: 1.3
Std nTPM: 7.1
Median nTPM: 12.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 44.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 36.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 33.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 32.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 31.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 31.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 29.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 28.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 28.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 28.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 28.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.4
FF:10164-103B2 76 years, female 16.4
Globus pallidus
Scaled Tags Per Million: 21.4
FF:10161-103A8 76 years, female 27.1
FF:10175-103C4 60 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 5.5
FF:10037-101F1 23-56 years, mixed 5.5
Putamen
Scaled Tags Per Million: 11.8
FF:10176-103C5 60 years, female 11.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.7
Pig sample Sample description nTPM
Caudate
nTPM: 3.5
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 4.0
Sample C Male 3.3
Sample D Male 3.4
Putamen
nTPM: 4.7
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.7
Sample A Female 5.8
Sample B Female 3.7
Sample C Male 3.8
Sample D Male 5.6
Septum
nTPM: 4.0
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.8
Sample A Female 4.0
Sample B Female 4.6
Sample C Male 2.8
Sample D Male 4.5
Ventral pallidum
nTPM: 4.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 5.0
Sample C Male 5.4
Sample D Male 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.0
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 2.1
Sample C Female 0.0
Sample D Female 1.8
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 10.4
Min nTPM: 4.4
Sample A Male 10.4
Sample B Male 8.0
Sample C Female 6.2
Sample D Female 4.4
Ventral forebrain
nTPM: 4.9
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.0
Sample A Male 4.5
Sample B Male 6.5
Sample C Female 4.4
Sample D Female 4.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
75214735 Antisense, RP_051130_01_A11, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.8
75214735 Antisense, RP_051130_01_A11, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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