MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA:27.7 nTPM
GTEx:31.8 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:22.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
1827 Male, age 72, unknown 27.6
1870 Female, age 42, unknown 27.4
2019 Male, age 18, unknown 26.9
2586 Male, age 75, left hemisphere 26.9
2411 Female, age 72, unknown 26.7
1833 Male, age 53, unknown 26.2
2666 Male, age 74, left hemisphere 26.1
1830 Male, age 51, unknown 25.8
2828 Female, age 72, unknown 25.4
2219 Male, age 76, both hemispheres 24.5
Dorsal raphe nucleus
nTPM: 27.5
2298 Female, age 72, unknown 28.8
1828 Male, age 53, unknown 28.2
2047 Male, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 27.0
2016 Female, age 72, unknown 26.4
Inferior colliculus
nTPM: 26.3
2097 Female, age 72, unknown 27.7
1848 Female, age 42, unknown 26.2
1890 Male, age 53, unknown 26.2
2849 Male, age 72, unknown 25.2
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Pedunculopontine tegmental nucleus
nTPM: 27.2
2334 Male, age 80, both hemispheres 27.5
1921 Female, age 85, both hemispheres 27.4
2338 Male, age 61, both hemispheres 26.6
Periaquaductal grey, anterior
nTPM: 27.4
1947 Male, age 18, unknown 28.3
2502 Female, age 75, unknown 27.0
1795 Male, age 51, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 26.6
2850 Male, age 76, both hemispheres 27.3
1840 Male, age 53, unknown 27.2
1831 Male, age 72, unknown 26.2
2464 Female, age 72, unknown 25.8
Periaquaductal grey, lateral
nTPM: 26.8
2272 Male, age 74, both hemispheres 27.9
2140 Male, age 76, both hemispheres 26.3
2053 Male, age 18, unknown 26.1
Pretectal area
nTPM: 27.2
2273 Male, age 74, both hemispheres 29.3
1816 Male, age 51, unknown 28.5
1944 Female, age 72, unknown 27.9
2007 Male, age 72, unknown 27.3
2224 Female, age 72, unknown 27.3
1815 Male, age 53, unknown 27.1
1817 Female, age 42, unknown 27.1
2667 Female, age 75, unknown 27.0
2825 Male, age 18, unknown 26.9
2407 Male, age 75, both hemispheres 25.4
2316 Male, age 76, right hemisphere 24.8
Red nucleus
nTPM: 26.4
1821 Female, age 72, unknown 29.0
1954 Female, age 42, unknown 27.2
2823 Male, age 76, right hemisphere 27.1
2725 Female, age 75, unknown 27.0
2584 Male, age 75, left hemisphere 26.8
2785 Male, age 18, unknown 26.3
2769 Male, age 72, unknown 26.2
1865 Male, age 51, unknown 25.9
2227 Male, age 72, unknown 25.8
2503 Female, age 72, unknown 25.3
1904 Male, age 53, unknown 24.9
2588 Male, age 74, left hemisphere 24.6
Substantia nigra
nTPM: 27.7
2241 Male, age 72, unknown 30.5
1916 Female, age 42, unknown 30.0
1851 Male, age 51, unknown 28.5
1941 Male, age 53, unknown 28.2
1889 Female, age 72, unknown 27.5
2409 Female, age 72, unknown 27.4
2699 Male, age 18, unknown 27.0
2590 Female, age 75, unknown 26.2
2665 Male, age 74, both hemispheres 25.9
2583 Male, age 75, right hemisphere 25.5
Superior colliculus
nTPM: 26.7
2668 Female, age 75, unknown 27.9
2664 Male, age 75, both hemispheres 27.4
1895 Male, age 76, right hemisphere 27.1
2087 Female, age 72, unknown 27.1
1796 Male, age 53, unknown 27.0
1839 Male, age 51, unknown 26.8
2261 Male, age 18, unknown 26.6
2587 Male, age 74, left hemisphere 26.6
1995 Male, age 72, unknown 25.5
1913 Female, age 42, unknown 25.1
Ventral tegmental area
nTPM: 26.3
1915 Female, age 42, unknown 27.7
2410 Female, age 72, unknown 26.9
2218 Male, age 76, both hemispheres 26.1
2021 Male, age 53, unknown 25.8
2223 Female, age 72, unknown 25.7
1942 Male, age 51, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.8
Samples: 139

Max nTPM: 69.6
Min nTPM: 15.5
Std nTPM: 7.3
Median nTPM: 30.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 59.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 43.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 43.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 41.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.9
FF:10158-103A5 76 years, female 21.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.9
Sample A Female 15.9
Sample B Female 14.1
Sample C Male 11.8
Sample D Male 10.9
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 12.3
Min nTPM: 10.7
Sample B Female 12.3
Sample C Male 11.2
Sample D Male 10.7
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 15.7
Min nTPM: 9.2
Sample A Female 15.7
Sample B Female 11.3
Sample C Male 15.4
Sample D Male 9.2
Superior colliculi
nTPM: 11.8
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.2
Sample A Female 13.4
Sample B Female 10.2
Sample C Male 13.2
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 21.2
Sample A Male 21.2
Sample B Male 21.3
Sample C Female 24.1
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
564754 Antisense, RP_040826_01_C11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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