MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:99.6 nTPM
HPA:99.6 nTPM
GTEx:94.3 nTPM
FANTOM5:126.3 Scaled Tags Per Million
Pig:66.1 nTPM
Mouse:5.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.5
2219 Male, age 76, both hemispheres 90.5
1833 Male, age 53, unknown 86.5
2586 Male, age 75, left hemisphere 86.4
1827 Male, age 72, unknown 85.6
2411 Female, age 72, unknown 85.4
2828 Female, age 72, unknown 85.1
1870 Female, age 42, unknown 84.8
2666 Male, age 74, left hemisphere 84.2
1830 Male, age 51, unknown 84.0
2019 Male, age 18, unknown 82.6
Dorsal raphe nucleus
nTPM: 89.7
2750 Male, age 76, both hemispheres 93.6
1828 Male, age 53, unknown 91.2
2047 Male, age 72, unknown 90.9
2298 Female, age 72, unknown 89.4
2016 Female, age 72, unknown 83.6
Inferior colliculus
nTPM: 81.3
1848 Female, age 42, unknown 83.3
2849 Male, age 72, unknown 82.1
2097 Female, age 72, unknown 80.6
1890 Male, age 53, unknown 79.3
Median raphe nucleus
nTPM: 99.6
2220 Male, age 76, midline 99.6
Pedunculopontine tegmental nucleus
nTPM: 90.8
2334 Male, age 80, both hemispheres 97.4
2338 Male, age 61, both hemispheres 89.2
1921 Female, age 85, both hemispheres 85.9
Periaquaductal grey, anterior
nTPM: 87.0
1795 Male, age 51, unknown 87.8
2502 Female, age 75, unknown 87.7
1947 Male, age 18, unknown 85.5
Periaquaductal grey, dorsal
nTPM: 81.8
2850 Male, age 76, both hemispheres 84.7
1831 Male, age 72, unknown 82.4
1840 Male, age 53, unknown 81.9
2464 Female, age 72, unknown 78.2
Periaquaductal grey, lateral
nTPM: 82.1
2053 Male, age 18, unknown 83.3
2272 Male, age 74, both hemispheres 83.1
2140 Male, age 76, both hemispheres 79.7
Pretectal area
nTPM: 84.2
1816 Male, age 51, unknown 88.1
1817 Female, age 42, unknown 87.3
1944 Female, age 72, unknown 86.2
2224 Female, age 72, unknown 86.1
2007 Male, age 72, unknown 86.0
1815 Male, age 53, unknown 85.5
2825 Male, age 18, unknown 83.7
2667 Female, age 75, unknown 82.4
2273 Male, age 74, both hemispheres 82.1
2407 Male, age 75, both hemispheres 79.9
2316 Male, age 76, right hemisphere 79.3
Red nucleus
nTPM: 84.9
1821 Female, age 72, unknown 88.5
2227 Male, age 72, unknown 87.9
2725 Female, age 75, unknown 85.6
2503 Female, age 72, unknown 85.4
2769 Male, age 72, unknown 85.4
1954 Female, age 42, unknown 84.9
2785 Male, age 18, unknown 84.4
1904 Male, age 53, unknown 84.1
2588 Male, age 74, left hemisphere 83.6
2823 Male, age 76, right hemisphere 83.4
2584 Male, age 75, left hemisphere 83.0
1865 Male, age 51, unknown 82.7
Substantia nigra
nTPM: 90.9
1916 Female, age 42, unknown 104.4
1851 Male, age 51, unknown 95.0
2699 Male, age 18, unknown 93.9
1941 Male, age 53, unknown 93.3
2665 Male, age 74, both hemispheres 91.8
2409 Female, age 72, unknown 89.7
1889 Female, age 72, unknown 86.7
2241 Male, age 72, unknown 85.8
2583 Male, age 75, right hemisphere 85.0
2590 Female, age 75, unknown 83.7
Superior colliculus
nTPM: 83.3
2668 Female, age 75, unknown 90.4
2664 Male, age 75, both hemispheres 84.8
2261 Male, age 18, unknown 84.2
1796 Male, age 53, unknown 84.0
2587 Male, age 74, left hemisphere 83.8
2087 Female, age 72, unknown 82.5
1839 Male, age 51, unknown 82.2
1913 Female, age 42, unknown 81.6
1895 Male, age 76, right hemisphere 79.7
1995 Male, age 72, unknown 79.7
Ventral tegmental area
nTPM: 91.4
2218 Male, age 76, both hemispheres 97.0
2223 Female, age 72, unknown 93.0
1915 Female, age 42, unknown 92.9
2410 Female, age 72, unknown 91.9
1942 Male, age 51, unknown 87.2
2021 Male, age 53, unknown 86.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.3
Samples: 139

Max nTPM: 148.1
Min nTPM: 57.5
Std nTPM: 17.3
Median nTPM: 93.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 148.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 142.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 140.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 139.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 134.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 132.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 129.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 127.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 125.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 120.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 118.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.3
FF:10158-103A5 76 years, female 126.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.1
Pig sample Sample description nTPM
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 86.3
Min nTPM: 50.0
Sample A Female 86.3
Sample B Female 53.7
Sample C Male 74.4
Sample D Male 50.0
Periaqueductal gray
nTPM: 46.7
Samples: 3

Max nTPM: 50.7
Min nTPM: 43.9
Sample B Female 43.9
Sample C Male 50.7
Sample D Male 45.6
Substantia nigra
nTPM: 59.6
Samples: 4

Max nTPM: 72.1
Min nTPM: 47.1
Sample A Female 72.1
Sample B Female 47.1
Sample C Male 65.1
Sample D Male 54.2
Superior colliculi
nTPM: 65.1
Samples: 4

Max nTPM: 77.5
Min nTPM: 52.7
Sample A Female 65.5
Sample B Female 52.7
Sample C Male 77.5
Sample D Male 64.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 2.7
Sample A Male 7.5
Sample B Male 2.7
Sample C Female 4.6
Sample D Female 5.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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