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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:549.6 nTPM
HPA:549.6 nTPM
GTEx:138.9 nTPM
FANTOM5:89.2 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:28.2 nTPM
Allen mouse:14.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 549.6
Sample id Sample description nTPM
Amygdala
nTPM: 403.1
2695 Female, age 67, right hemisphere 498.6
2514 Male, age 75, right hemisphere 491.9
2517 Female, age 94, left hemisphere 462.0
2814 Male, age 76, right hemisphere 364.6
1987 Female, age 91, left hemisphere 198.4
Basal amygdala
nTPM: 370.9
2827 Female, age 67, right hemisphere 484.6
2609 Male, age 75, right hemisphere 465.8
2110 Male, age 80, left hemisphere 355.8
2243 Female, age 91, right hemisphere 339.8
2685 Female, age 94, left hemisphere 321.8
1955 Male, age 76, both hemispheres 257.4
Central amygdala
nTPM: 541.0
2826 Female, age 94, left hemisphere 718.0
2515 Male, age 75, right hemisphere 684.3
2239 Male, age 80, left hemisphere 611.0
2701 Female, age 91, right hemisphere 366.7
1905 Male, age 76, both hemispheres 324.9
Corticomedial amygdala
nTPM: 440.3
2535 Female, age 67, right hemisphere 812.7
2829 Male, age 80, left hemisphere 523.0
2242 Female, age 91, right hemisphere 402.7
2428 Male, age 75, right hemisphere 318.7
2240 Male, age 76, both hemispheres 312.2
2429 Female, age 94, left hemisphere 272.6
Lateral amygdala
nTPM: 549.6
2256 Male, age 80, left hemisphere 792.3
2534 Female, age 94, left hemisphere 630.6
2255 Female, age 91, right hemisphere 614.5
2516 Male, age 75, right hemisphere 510.8
2830 Female, age 67, right hemisphere 426.5
1883 Male, age 76, both hemispheres 323.0
Stria terminalis, bed nucleus
nTPM: 433.2
2201 Male, age 74, unknown 649.2
1974 Female, age 91, both hemispheres 353.7
2486 Female, age 94, both hemispheres 296.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 138.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 138.9
Samples: 152

Max nTPM: 436.3
Min nTPM: 21.7
Std nTPM: 71.6
Median nTPM: 128.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 436.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 359.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 335.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 325.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 310.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 301.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 293.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 283.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 270.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 269.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 261.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 255.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 252.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 246.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 243.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 240.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 226.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 214.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 208.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 206.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 205.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 204.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 203.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 196.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 193.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 192.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 192.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 192.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 191.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 188.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 188.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 187.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 187.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 186.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 184.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 183.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 179.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 178.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 175.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 172.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 170.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 169.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 168.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 167.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 166.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 166.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 162.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 162.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 159.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 159.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 158.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 156.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 155.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 155.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 154.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 152.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 152.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 152.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 151.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 150.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 150.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 150.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 149.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 148.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 147.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 147.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 142.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 140.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 138.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 138.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 136.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 132.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 129.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 129.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 128.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 127.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 126.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 124.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 122.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 121.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 111.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 111.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 111.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 110.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 109.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 108.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 106.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 103.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 103.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 103.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 103.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 103.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 103.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 102.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 102.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 99.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 98.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 94.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 93.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 91.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 91.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 89.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 88.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 88.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 87.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 86.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 84.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 83.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 82.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 82.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 80.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 80.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 80.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 79.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 76.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 75.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 74.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 74.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 73.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 72.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 71.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 70.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 68.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 68.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 66.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 65.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 62.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 61.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 60.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 57.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 56.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 56.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 56.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 52.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 52.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 51.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 51.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 46.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 39.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 36.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 21.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 89.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 89.2
FF:10151-102I7 76 years, female 89.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.4
Pig sample Sample description nTPM
Amygdala
nTPM: 30.4
Samples: 4

Max nTPM: 43.1
Min nTPM: 20.6
Sample A Female 26.3
Sample B Female 43.1
Sample C Male 31.6
Sample D Male 20.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.3
Samples: 4

Max nTPM: 44.0
Min nTPM: 20.5
Sample A Male 25.3
Sample B Male 20.5
Sample C Female 44.0
Sample D Female 23.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.8
1881 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 14.8
1880 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 7.5

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