MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:601.6 nTPM
HPA:601.6 nTPM
GTEx:171.8 nTPM
FANTOM5:321.0 Scaled Tags Per Million
Pig:85.7 nTPM
Mouse:74.5 nTPM
Allen mouse:10.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 601.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 601.6
2586 Male, age 75, left hemisphere 1206.0
2411 Female, age 72, unknown 717.0
2219 Male, age 76, both hemispheres 584.4
1870 Female, age 42, unknown 575.9
2666 Male, age 74, left hemisphere 575.8
2019 Male, age 18, unknown 553.0
1833 Male, age 53, unknown 517.7
1830 Male, age 51, unknown 481.1
2828 Female, age 72, unknown 464.6
1827 Male, age 72, unknown 340.7
Dorsal raphe nucleus
nTPM: 487.9
2750 Male, age 76, both hemispheres 722.7
2298 Female, age 72, unknown 445.8
2047 Male, age 72, unknown 442.1
2016 Female, age 72, unknown 416.5
1828 Male, age 53, unknown 412.3
Inferior colliculus
nTPM: 477.9
1890 Male, age 53, unknown 605.6
2849 Male, age 72, unknown 559.7
2097 Female, age 72, unknown 373.8
1848 Female, age 42, unknown 372.4
Median raphe nucleus
nTPM: 551.2
2220 Male, age 76, midline 551.2
Pedunculopontine tegmental nucleus
nTPM: 454.1
2334 Male, age 80, both hemispheres 565.4
2338 Male, age 61, both hemispheres 497.7
1921 Female, age 85, both hemispheres 299.1
Periaquaductal grey, anterior
nTPM: 562.6
2502 Female, age 75, unknown 901.6
1795 Male, age 51, unknown 538.9
1947 Male, age 18, unknown 247.4
Periaquaductal grey, dorsal
nTPM: 466.6
2464 Female, age 72, unknown 712.5
2850 Male, age 76, both hemispheres 510.9
1840 Male, age 53, unknown 453.8
1831 Male, age 72, unknown 189.3
Periaquaductal grey, lateral
nTPM: 339.6
2140 Male, age 76, both hemispheres 435.1
2053 Male, age 18, unknown 378.4
2272 Male, age 74, both hemispheres 205.3
Pretectal area
nTPM: 377.7
2007 Male, age 72, unknown 639.6
2224 Female, age 72, unknown 519.0
2667 Female, age 75, unknown 395.0
1817 Female, age 42, unknown 386.8
2825 Male, age 18, unknown 381.4
1816 Male, age 51, unknown 375.0
1815 Male, age 53, unknown 365.0
2316 Male, age 76, right hemisphere 311.4
2407 Male, age 75, both hemispheres 287.4
1944 Female, age 72, unknown 251.9
2273 Male, age 74, both hemispheres 242.7
Red nucleus
nTPM: 600.5
2503 Female, age 72, unknown 995.1
2769 Male, age 72, unknown 854.5
2227 Male, age 72, unknown 822.8
2588 Male, age 74, left hemisphere 721.4
2785 Male, age 18, unknown 673.8
1865 Male, age 51, unknown 652.1
1904 Male, age 53, unknown 575.8
2584 Male, age 75, left hemisphere 535.0
1954 Female, age 42, unknown 515.1
2823 Male, age 76, right hemisphere 302.4
2725 Female, age 75, unknown 296.7
1821 Female, age 72, unknown 261.6
Substantia nigra
nTPM: 353.5
1851 Male, age 51, unknown 479.6
2583 Male, age 75, right hemisphere 476.9
2699 Male, age 18, unknown 441.0
2665 Male, age 74, both hemispheres 422.3
2590 Female, age 75, unknown 409.2
1889 Female, age 72, unknown 338.3
1916 Female, age 42, unknown 305.8
2409 Female, age 72, unknown 255.3
1941 Male, age 53, unknown 254.4
2241 Male, age 72, unknown 152.5
Superior colliculus
nTPM: 484.4
2587 Male, age 74, left hemisphere 702.4
1995 Male, age 72, unknown 620.3
2664 Male, age 75, both hemispheres 567.4
2261 Male, age 18, unknown 545.7
1796 Male, age 53, unknown 503.5
1913 Female, age 42, unknown 477.9
1839 Male, age 51, unknown 399.9
2668 Female, age 75, unknown 374.9
2087 Female, age 72, unknown 357.6
1895 Male, age 76, right hemisphere 294.3
Ventral tegmental area
nTPM: 518.2
2223 Female, age 72, unknown 784.8
2021 Male, age 53, unknown 587.4
2218 Male, age 76, both hemispheres 504.7
1915 Female, age 42, unknown 461.1
1942 Male, age 51, unknown 429.4
2410 Female, age 72, unknown 342.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 171.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 171.8
Samples: 139

Max nTPM: 747.7
Min nTPM: 46.6
Std nTPM: 106.0
Median nTPM: 137.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 747.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 542.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 471.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 452.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 445.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 434.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 391.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 373.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 373.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 361.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 339.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 321.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 321.0
FF:10158-103A5 76 years, female 321.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.7
Pig sample Sample description nTPM
Midbrain
nTPM: 73.7
Samples: 4

Max nTPM: 103.0
Min nTPM: 51.1
Sample A Female 103.0
Sample B Female 87.1
Sample C Male 51.1
Sample D Male 53.7
Periaqueductal gray
nTPM: 60.3
Samples: 3

Max nTPM: 71.3
Min nTPM: 52.0
Sample B Female 71.3
Sample C Male 52.0
Sample D Male 57.6
Substantia nigra
nTPM: 85.7
Samples: 4

Max nTPM: 121.3
Min nTPM: 59.1
Sample A Female 92.3
Sample B Female 59.1
Sample C Male 69.9
Sample D Male 121.3
Superior colliculi
nTPM: 68.1
Samples: 4

Max nTPM: 87.0
Min nTPM: 31.5
Sample A Female 87.0
Sample B Female 31.5
Sample C Male 72.6
Sample D Male 81.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.6
Samples: 4

Max nTPM: 82.8
Min nTPM: 66.2
Sample A Male 82.8
Sample B Male 71.7
Sample C Female 66.2
Sample D Female 77.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.3
1881 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 10.3
1880 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.