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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:689.1 nTPM
HPA:689.1 nTPM
GTEx:190.8 nTPM
FANTOM5:132.1 Scaled Tags Per Million
Pig:66.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 689.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 689.1
2565 Male, age 75, midline 1037.3
2194 Female, age 79, both hemispheres 755.6
1981 Female, age 72, midline 611.9
2048 Male, age 55, midline 540.0
2816 Male, age 47, midline 500.7
Cervical spinal cord, dorsal horn
nTPM: 569.7
1877 Male, age 55, unknown 749.2
2173 Female, age 72, unknown 724.4
2069 Male, age 47, both hemispheres 686.0
2296 Male, age 66, both hemispheres 670.7
2297 Male, age 75, both hemispheres 357.0
2721 Male, age 90, both hemispheres 230.5
Cervical spinal cord, ventral horn
nTPM: 582.8
2068 Male, age 55, unknown 990.3
2809 Male, age 90, both hemispheres 895.4
2480 Male, age 75, both hemispheres 817.9
2820 Female, age 79, both hemispheres 378.9
2098 Female, age 72, unknown 224.5
2295 Male, age 66, both hemispheres 189.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 190.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 190.8
Samples: 159

Max nTPM: 746.9
Min nTPM: 34.2
Std nTPM: 94.6
Median nTPM: 169.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 746.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 482.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 408.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 407.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 389.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 377.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 367.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 359.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 350.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 348.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 339.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 336.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 329.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 329.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 321.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 320.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 312.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 311.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 302.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 298.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 296.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 292.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 289.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 284.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 282.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 280.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 280.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 279.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 279.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 278.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 271.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 258.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 257.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 254.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 249.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 248.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 248.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 234.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 233.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 233.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 233.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 229.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 227.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 227.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 225.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 213.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 212.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 211.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 211.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 209.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 206.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 206.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 205.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 201.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 200.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 199.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 199.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 197.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 194.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 194.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 194.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 193.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 189.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 188.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 182.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 180.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 177.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 177.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 174.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 174.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 174.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 173.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 173.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 172.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 172.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 171.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 170.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 169.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 168.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 167.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 166.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 165.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 164.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 164.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 163.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 163.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 159.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 158.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 155.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 154.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 152.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 151.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 150.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 150.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 149.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 149.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 149.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 148.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 148.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 147.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 146.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 146.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 146.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 146.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 145.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 141.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 141.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 140.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 139.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 139.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 139.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 138.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 137.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 135.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 135.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 130.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 128.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 126.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 124.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 118.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 118.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 117.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 116.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 116.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 115.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 115.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 115.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 115.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 113.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 112.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 110.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 105.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 105.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 104.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 102.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 101.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 101.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 96.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 95.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 94.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 94.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 85.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 80.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 76.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 73.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 73.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 69.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 65.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 62.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 60.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 55.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 47.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 34.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 132.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 132.1
FF:10181-103D1 60 years, female 200.3
FF:10159-103A6 76 years, female 63.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 66.4
Samples: 4

Max nTPM: 71.5
Min nTPM: 58.2
Sample A Female 71.5
Sample B Female 65.4
Sample C Male 58.2
Sample D Male 70.4
Ventral spinal cord
nTPM: 63.9
Samples: 4

Max nTPM: 68.5
Min nTPM: 61.1
Sample A Female 68.5
Sample B Female 61.1
Sample C Male 61.4
Sample D Male 64.6

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