We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CMC2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CMC2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:77.3 nTPM
FANTOM5:38.4 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Amygdala
nTPM: 46.8
2814 Male, age 76, right hemisphere 48.6
2517 Female, age 94, left hemisphere 47.7
2514 Male, age 75, right hemisphere 47.0
1987 Female, age 91, left hemisphere 45.8
2695 Female, age 67, right hemisphere 45.2
Basal amygdala
nTPM: 46.6
2243 Female, age 91, right hemisphere 48.1
2685 Female, age 94, left hemisphere 47.8
2609 Male, age 75, right hemisphere 47.3
2110 Male, age 80, left hemisphere 46.6
1955 Male, age 76, both hemispheres 46.0
2827 Female, age 67, right hemisphere 43.8
Central amygdala
nTPM: 47.6
2826 Female, age 94, left hemisphere 51.2
1905 Male, age 76, both hemispheres 49.7
2515 Male, age 75, right hemisphere 46.2
2239 Male, age 80, left hemisphere 45.5
2701 Female, age 91, right hemisphere 45.5
Corticomedial amygdala
nTPM: 47.0
2428 Male, age 75, right hemisphere 50.0
2242 Female, age 91, right hemisphere 48.7
2429 Female, age 94, left hemisphere 48.2
2829 Male, age 80, left hemisphere 47.4
2240 Male, age 76, both hemispheres 44.6
2535 Female, age 67, right hemisphere 43.0
Lateral amygdala
nTPM: 46.4
2516 Male, age 75, right hemisphere 50.3
1883 Male, age 76, both hemispheres 48.0
2534 Female, age 94, left hemisphere 47.2
2255 Female, age 91, right hemisphere 44.6
2830 Female, age 67, right hemisphere 44.3
2256 Male, age 80, left hemisphere 43.8
Stria terminalis, bed nucleus
nTPM: 47.0
1974 Female, age 91, both hemispheres 47.6
2201 Male, age 74, unknown 47.6
2486 Female, age 94, both hemispheres 45.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 77.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 77.3
Samples: 152

Max nTPM: 240.2
Min nTPM: 27.0
Std nTPM: 26.7
Median nTPM: 71.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 240.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 201.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 168.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 157.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 132.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 126.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 126.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 122.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 120.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 111.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 110.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 107.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 105.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 98.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 98.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 96.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 96.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 96.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 96.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 93.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 91.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 91.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 90.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 90.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 89.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 88.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 88.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 86.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 86.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 86.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 84.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 84.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 84.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 83.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 81.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 81.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 81.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 81.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 80.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 80.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 79.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 79.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 79.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 78.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 77.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 76.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 76.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 76.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 76.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 76.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 73.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 73.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 73.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 73.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 73.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 73.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 72.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 72.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 72.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 72.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 71.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 71.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 71.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 70.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 70.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 70.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 70.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 70.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 70.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 70.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 69.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 69.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 69.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 69.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 69.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 68.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 68.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 68.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 67.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 66.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 66.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 66.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 66.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 65.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 65.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 65.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 65.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 64.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 64.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 63.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 62.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 62.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 62.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 61.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 61.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 59.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 59.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 59.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 59.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 59.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 59.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 59.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 58.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 57.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 57.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 56.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 56.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 56.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 55.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 55.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 53.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 53.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 51.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 51.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 50.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 50.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 49.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 47.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 47.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 47.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 41.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 40.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 40.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 27.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 38.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 38.4
FF:10151-102I7 76 years, female 38.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.