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TISSUE PRIMARY DATA PONS AND MEDULLA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:47.6 nTPM
HPA:47.6 nTPM
FANTOM5:55.9 Scaled Tags Per Million

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 46.5
1984 Male, age 76, both hemispheres 48.2
2090 Male, age 80, both hemispheres 47.2
2188 Female, age 91, both hemispheres 46.1
2301 Female, age 85, both hemispheres 44.6
Area postrema
nTPM: 44.8
2054 Male, age 76, both hemispheres 45.2
2306 Male, age 80, both hemispheres 44.8
2799 Male, age 61, both hemispheres 44.5
Cuneate nuclei
nTPM: 46.0
2376 Male, age 61, both hemispheres 48.8
2131 Male, age 76, both hemispheres 44.7
2381 Male, age 80, both hemispheres 44.6
Dorsal cochlear nucleus
nTPM: 46.9
2187 Female, age 91, both hemispheres 47.7
2802 Male, age 74, right hemisphere 47.3
2058 Male, age 76, both hemispheres 47.0
2370 Male, age 61, both hemispheres 46.7
2378 Male, age 80, both hemispheres 45.9
Dorsal medullary reticular nucleus
nTPM: 47.1
2040 Female, age 85, both hemispheres 49.0
2373 Male, age 61, both hemispheres 46.3
2088 Male, age 76, both hemispheres 45.9
Dorsal motor vagal complex
nTPM: 45.4
2133 Female, age 91, both hemispheres 46.4
2844 Male, age 55, unknown 46.4
2813 Female, age 72, unknown 46.1
2643 Male, age 74, both hemispheres 45.6
2797 Male, age 61, both hemispheres 45.4
2807 Female, age 85, both hemispheres 45.2
2000 Male, age 74, unknown 44.7
2185 Male, age 76, both hemispheres 43.5
Dorsal tegmental nucleus
nTPM: 45.6
1936 Male, age 76, left hemisphere 47.1
2083 Male, age 80, both hemispheres 46.9
2326 Male, age 74, both hemispheres 46.9
2358 Male, age 61, both hemispheres 41.4
Dorsolateral tegmental area
nTPM: 46.2
2751 Female, age 85, both hemispheres 48.5
2360 Male, age 74, both hemispheres 47.3
2654 Male, age 80, both hemispheres 46.8
2141 Male, age 76, both hemispheres 45.1
2337 Male, age 61, both hemispheres 43.4
Gigantocellular reticular nuclei, medullary
nTPM: 46.6
2314 Male, age 61, both hemispheres 49.8
1876 Female, age 85, both hemispheres 48.2
2022 Male, age 76, right hemisphere 46.9
2387 Female, age 91, both hemispheres 45.4
2462 Male, age 74, both hemispheres 45.1
2310 Male, age 80, both hemispheres 44.4
Gigantocellular reticular nuclei, pars
nTPM: 44.9
2084 Female, age 85, both hemispheres 46.3
2168 Male, age 76, both hemispheres 45.5
2336 Male, age 61, both hemispheres 44.8
2330 Male, age 80, both hemispheres 44.4
2706 Male, age 80, both hemispheres 43.6
Inferior olive
nTPM: 46.6
2563 Male, age 74, both hemispheres 50.2
2178 Male, age 61, both hemispheres 48.1
2085 Female, age 85, both hemispheres 46.6
2379 Male, age 80, both hemispheres 45.0
2628 Female, age 91, both hemispheres 43.1
Kolliker-Fuse nucleus
nTPM: 46.1
2315 Male, age 76, right hemisphere 46.8
2163 Male, age 80, both hemispheres 46.0
2793 Female, age 91, left hemisphere 45.4
Lateral lemniscal nuclei
nTPM: 45.4
2036 Male, age 80, both hemispheres 47.5
2169 Male, age 76, both hemispheres 45.9
2746 Female, age 85, left hemisphere 45.4
2453 Male, age 74, right hemisphere 44.5
2320 Female, age 91, left hemisphere 43.7
Lateral medullary reticular nucleus
nTPM: 46.2
2044 Male, age 76, both hemispheres 47.6
2305 Male, age 74, both hemispheres 47.3
2852 Male, age 80, both hemispheres 47.2
2804 Female, age 91, both hemispheres 46.0
2374 Male, age 61, both hemispheres 45.0
2190 Female, age 85, both hemispheres 44.0
Lateral parabrachial nucleus
nTPM: 46.3
2792 Male, age 76, both hemispheres 50.2
2013 Male, age 80, both hemispheres 45.9
2139 Female, age 85, right hemisphere 44.9
2790 Male, age 61, both hemispheres 44.1
Lateral vestibular nucleus
nTPM: 45.5
2184 Male, age 76, both hemispheres 46.7
2311 Male, age 80, both hemispheres 44.2
Locus coeruleus
nTPM: 46.7
2014 Male, age 55, unknown 49.1
2123 Female, age 91, both hemispheres 48.7
2788 Male, age 74, unknown 47.6
2720 Male, age 74, both hemispheres 46.9
2317 Female, age 72, unknown 45.6
1980 Male, age 76, both hemispheres 44.8
2162 Male, age 80, both hemispheres 44.2
Medial olivary nucleus
nTPM: 46.9
1943 Male, age 61, both hemispheres 48.7
2138 Female, age 91, both hemispheres 47.1
1962 Male, age 76, both hemispheres 46.7
2851 Male, age 80, both hemispheres 45.1
Medial parabrachial nucleus
nTPM: 46.2
2170 Female, age 91, both hemispheres 47.3
2786 Male, age 76, both hemispheres 46.8
2463 Female, age 85, right hemisphere 46.1
2854 Male, age 80, both hemispheres 46.1
2156 Male, age 61, both hemispheres 44.8
Medial periolivary nuclei
nTPM: 46.2
2063 Male, age 76, both hemispheres 48.0
2171 Female, age 85, both hemispheres 46.9
2791 Male, age 74, right hemisphere 46.5
2081 Male, age 80, both hemispheres 45.6
2458 Female, age 91, both hemispheres 44.1
Medial vestibular nucleus
nTPM: 47.0
2801 Male, age 74, both hemispheres 48.3
2093 Male, age 80, both hemispheres 47.6
2803 Female, age 91, both hemispheres 47.1
2624 Male, age 61, both hemispheres 46.7
2743 Female, age 85, both hemispheres 46.3
2134 Male, age 76, both hemispheres 45.9
Motor facial nucleus
nTPM: 46.3
2062 Male, age 76, both hemispheres 48.2
2126 Male, age 61, both hemispheres 47.7
2365 Male, age 74, right hemisphere 46.8
2327 Male, age 80, both hemispheres 46.5
2697 Female, age 85, both hemispheres 44.3
2795 Female, age 91, both hemispheres 44.2
Motor hypoglossal nucleus
nTPM: 44.8
2125 Female, age 91, both hemispheres 46.4
2132 Female, age 85, both hemispheres 44.9
2277 Male, age 76, both hemispheres 44.8
2182 Male, age 80, both hemispheres 44.3
2461 Male, age 61, both hemispheres 43.6
Motor trigeminal nucleus
nTPM: 45.3
2309 Male, age 76, both hemispheres 47.0
2079 Male, age 80, both hemispheres 46.1
2560 Male, age 74, both hemispheres 45.3
2335 Male, age 61, both hemispheres 44.8
2321 Female, age 91, both hemispheres 43.5
Nuclei of the trapezoid body
nTPM: 46.1
2159 Male, age 61, both hemispheres 49.6
1983 Male, age 76, both hemispheres 46.6
2735 Female, age 85, both hemispheres 45.7
2166 Male, age 80, both hemispheres 44.6
2368 Female, age 91, both hemispheres 44.1
Nucleus ambiguus
nTPM: 46.0
2071 Male, age 76, both hemispheres 48.4
2096 Female, age 85, both hemispheres 43.7
Nucleus cuneatus
nTPM: 45.9
2564 Male, age 74, both hemispheres 49.5
2805 Female, age 91, both hemispheres 46.4
2808 Female, age 85, both hemispheres 45.4
2380 Male, age 80, both hemispheres 45.2
2100 Male, age 76, both hemispheres 44.7
2562 Male, age 61, both hemispheres 44.0
Nucleus gracilis
nTPM: 45.1
2627 Male, age 74, both hemispheres 47.2
2382 Male, age 80, both hemispheres 44.3
2299 Female, age 85, both hemispheres 43.7
Nucleus raphe magnus
nTPM: 46.7
2160 Male, age 61, both hemispheres 49.4
2455 Male, age 74, both hemispheres 48.9
2172 Female, age 85, both hemispheres 46.5
2051 Male, age 76, both hemispheres 45.6
2459 Female, age 91, both hemispheres 44.9
2328 Male, age 80, both hemispheres 44.7
Nucleus raphe obscurus
nTPM: 47.0
2800 Male, age 61, midline 48.0
2845 Female, age 85, midline 46.8
2142 Male, age 76, midline 46.3
Nucleus raphe pallidus
nTPM: 46.9
1924 Male, age 61, midline 48.9
2183 Male, age 80, midline 46.1
2145 Male, age 76, midline 45.7
Nucleus tractus solitarii
nTPM: 45.9
2144 Female, age 91, right hemisphere 50.9
2656 Male, age 76, both hemispheres 46.4
2191 Female, age 85, both hemispheres 44.1
2307 Male, age 80, both hemispheres 42.0
Paramedian reticular nucleus
nTPM: 47.5
2057 Male, age 80, both hemispheres 48.1
2052 Male, age 76, both hemispheres 47.7
2313 Male, age 61, both hemispheres 47.3
2050 Female, age 85, both hemispheres 46.8
Parvicellular reticular nuclei
nTPM: 46.3
2119 Male, age 80, both hemispheres 47.8
2095 Male, age 76, both hemispheres 46.3
2558 Male, age 74, both hemispheres 44.7
Parvicellular reticular nuclei, medullary
nTPM: 46.8
2189 Female, age 91, both hemispheres 47.5
2091 Female, age 85, both hemispheres 46.9
2181 Male, age 80, left hemisphere 45.9
Peritrigeminal nucleus
nTPM: 47.0
2179 Male, age 61, both hemispheres 47.7
2136 Male, age 76, both hemispheres 47.6
2067 Female, age 85, both hemispheres 45.8
Pontine nuclei
nTPM: 46.3
2727 Male, age 61, right hemisphere 49.0
2454 Male, age 74, left hemisphere 47.2
1863 Male, age 55, unknown 47.1
1968 Male, age 76, left hemisphere 46.7
2109 Female, age 72, unknown 46.6
2787 Female, age 85, both hemispheres 45.9
2319 Female, age 91, both hemispheres 44.7
2115 Male, age 80, left hemisphere 43.3
Pontine raphe nucleus
nTPM: 46.4
2853 Male, age 76, midline 46.6
2122 Female, age 85, midline 46.2
Posteroventral cochlear nucleus
nTPM: 47.2
2752 Female, age 85, both hemispheres 49.2
2371 Male, age 61, both hemispheres 47.1
2070 Male, age 76, both hemispheres 46.9
2341 Male, age 80, both hemispheres 46.6
2135 Female, age 91, both hemispheres 46.3
Prepositus hypoglossal nucleus
nTPM: 46.7
2855 Female, age 85, right hemisphere 47.5
2086 Male, age 80, both hemispheres 45.9
Principal sensory trigeminal nucleus
nTPM: 46.7
2158 Male, age 61, both hemispheres 48.4
2008 Male, age 80, left hemisphere 46.6
2367 Female, age 91, left hemisphere 46.1
2324 Male, age 76, both hemispheres 45.7
Reticular pontine nucleus, caudal
nTPM: 45.5
2559 Male, age 74, both hemispheres 47.9
2092 Male, age 76, both hemispheres 46.9
2332 Male, age 80, right hemisphere 43.7
2457 Female, age 91, both hemispheres 43.6
Reticular pontine nucleus, oral
nTPM: 45.9
2012 Female, age 85, both hemispheres 48.7
2366 Female, age 91, both hemispheres 47.6
1939 Male, age 80, both hemispheres 47.1
2167 Male, age 76, both hemispheres 46.9
2361 Male, age 74, both hemispheres 39.3
Reticulotegmental nucleus
nTPM: 44.8
2452 Male, age 74, both hemispheres 45.8
2322 Female, age 91, both hemispheres 44.8
2325 Male, age 76, both hemispheres 44.8
2333 Male, age 80, both hemispheres 43.9
Spinal trigeminal nucleus, caudal
nTPM: 46.2
2390 Female, age 91, both hemispheres 47.8
2447 Male, age 76, both hemispheres 46.8
2308 Male, age 80, both hemispheres 45.6
2642 Male, age 74, both hemispheres 45.3
2312 Male, age 61, both hemispheres 45.2
Spinal trigeminal nucleus, interpolar
nTPM: 47.4
2066 Male, age 76, right hemisphere 48.5
2386 Female, age 85, both hemispheres 48.1
2033 Male, age 80, both hemispheres 47.7
2625 Male, age 61, both hemispheres 46.9
2389 Female, age 91, both hemispheres 46.0
Spinal trigeminal nucleus, oral
nTPM: 46.4
1978 Male, age 76, both hemispheres 47.9
2737 Female, age 85, both hemispheres 46.5
2164 Male, age 80, both hemispheres 44.8
Spinal vestibular nucleus
nTPM: 47.6
2806 Female, age 85, both hemispheres 49.4
2780 Male, age 80, both hemispheres 48.8
2748 Male, age 76, both hemispheres 47.9
2384 Male, age 74, both hemispheres 47.6
2186 Female, age 91, both hemispheres 46.6
2796 Male, age 61, both hemispheres 45.2
Subcoeruleus area
nTPM: 47.1
1958 Male, age 80, both hemispheres 48.6
2369 Female, age 85, left hemisphere 47.4
2451 Male, age 74, both hemispheres 47.1
2323 Female, age 91, left hemisphere 46.4
2089 Male, age 76, left hemisphere 45.8
Superior olive
nTPM: 46.6
1875 Female, age 85, both hemispheres 48.3
2364 Male, age 74, right hemisphere 47.6
2020 Male, age 76, both hemispheres 46.7
2561 Female, age 91, both hemispheres 45.8
2329 Male, age 80, right hemisphere 44.6
Superior vestibular nucleus
nTPM: 46.6
2015 Male, age 80, both hemispheres 47.1
2383 Male, age 74, both hemispheres 46.7
2061 Male, age 76, both hemispheres 46.1
Ventral medullary reticular nucleus
nTPM: 47.5
2372 Male, age 61, both hemispheres 48.1
2060 Male, age 76, both hemispheres 46.9
Ventral periolivary nuclei
nTPM: 46.7
2165 Male, age 80, both hemispheres 49.1
2023 Male, age 76, both hemispheres 47.1
2130 Female, age 85, both hemispheres 46.3
2794 Female, age 91, left hemisphere 44.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 45.9
1986 Male, age 76, both hemispheres 47.4
2180 Male, age 61, both hemispheres 47.4
2741 Female, age 85, both hemispheres 46.3
2118 Male, age 80, both hemispheres 44.3
2302 Female, age 91, both hemispheres 44.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 45.4
1959 Male, age 76, both hemispheres 46.8
2359 Male, age 61, both hemispheres 45.5
2840 Female, age 85, both hemispheres 45.4
2161 Male, age 80, both hemispheres 45.2
2449 Male, age 74, both hemispheres 45.1
2456 Female, age 91, both hemispheres 44.6

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 55.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 55.9
FF:10165-103B3 76 years, female 56.0
FF:10182-103D2 60 years, female 55.8
Medulla oblongata
Scaled Tags Per Million: 47.2
FF:10174-103C3 60 years, female 62.9
FF:10155-103A2 76 years, female 40.4
FF:10038-101F2 18-64 years, mixed 38.3
Pons
Scaled Tags Per Million: 50.3
FF:10033-101E6 18-54 years, mixed 50.3

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