MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:182.7 nTPM
HPA:182.7 nTPM
GTEx:198.6 nTPM
FANTOM5:115.0 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:181.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 182.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 162.2
2219 Male, age 76, both hemispheres 173.5
1827 Male, age 72, unknown 171.3
2828 Female, age 72, unknown 169.9
2666 Male, age 74, left hemisphere 166.5
2019 Male, age 18, unknown 160.9
2411 Female, age 72, unknown 159.2
1833 Male, age 53, unknown 157.2
1870 Female, age 42, unknown 156.0
2586 Male, age 75, left hemisphere 155.5
1830 Male, age 51, unknown 152.0
Dorsal raphe nucleus
nTPM: 159.6
2298 Female, age 72, unknown 169.2
2750 Male, age 76, both hemispheres 166.3
2047 Male, age 72, unknown 165.1
1828 Male, age 53, unknown 154.0
2016 Female, age 72, unknown 143.5
Inferior colliculus
nTPM: 156.4
2097 Female, age 72, unknown 160.1
2849 Male, age 72, unknown 157.3
1890 Male, age 53, unknown 155.8
1848 Female, age 42, unknown 152.4
Median raphe nucleus
nTPM: 182.7
2220 Male, age 76, midline 182.7
Pedunculopontine tegmental nucleus
nTPM: 162.9
2334 Male, age 80, both hemispheres 166.7
1921 Female, age 85, both hemispheres 164.4
2338 Male, age 61, both hemispheres 157.5
Periaquaductal grey, anterior
nTPM: 159.2
1795 Male, age 51, unknown 168.5
1947 Male, age 18, unknown 162.0
2502 Female, age 75, unknown 147.0
Periaquaductal grey, dorsal
nTPM: 152.8
1831 Male, age 72, unknown 158.8
2850 Male, age 76, both hemispheres 153.2
1840 Male, age 53, unknown 150.4
2464 Female, age 72, unknown 148.9
Periaquaductal grey, lateral
nTPM: 148.8
2272 Male, age 74, both hemispheres 155.2
2053 Male, age 18, unknown 151.0
2140 Male, age 76, both hemispheres 140.3
Pretectal area
nTPM: 167.4
1816 Male, age 51, unknown 189.7
1817 Female, age 42, unknown 185.4
2007 Male, age 72, unknown 185.4
1944 Female, age 72, unknown 183.1
1815 Male, age 53, unknown 178.1
2667 Female, age 75, unknown 167.1
2224 Female, age 72, unknown 156.6
2407 Male, age 75, both hemispheres 155.0
2825 Male, age 18, unknown 154.5
2273 Male, age 74, both hemispheres 148.8
2316 Male, age 76, right hemisphere 138.4
Red nucleus
nTPM: 153.3
2584 Male, age 75, left hemisphere 167.1
2785 Male, age 18, unknown 161.1
2725 Female, age 75, unknown 159.2
2823 Male, age 76, right hemisphere 155.9
1821 Female, age 72, unknown 154.9
2588 Male, age 74, left hemisphere 153.0
2503 Female, age 72, unknown 150.4
1954 Female, age 42, unknown 149.8
1865 Male, age 51, unknown 148.5
2769 Male, age 72, unknown 147.4
1904 Male, age 53, unknown 146.6
2227 Male, age 72, unknown 146.2
Substantia nigra
nTPM: 173.5
1916 Female, age 42, unknown 200.0
2665 Male, age 74, both hemispheres 190.2
1941 Male, age 53, unknown 186.2
1851 Male, age 51, unknown 180.1
1889 Female, age 72, unknown 176.8
2699 Male, age 18, unknown 167.7
2241 Male, age 72, unknown 163.5
2409 Female, age 72, unknown 161.0
2583 Male, age 75, right hemisphere 156.5
2590 Female, age 75, unknown 153.2
Superior colliculus
nTPM: 161.4
2668 Female, age 75, unknown 188.4
1796 Male, age 53, unknown 171.4
2087 Female, age 72, unknown 170.4
2587 Male, age 74, left hemisphere 162.9
2261 Male, age 18, unknown 159.3
1895 Male, age 76, right hemisphere 155.5
2664 Male, age 75, both hemispheres 154.8
1839 Male, age 51, unknown 153.1
1913 Female, age 42, unknown 151.9
1995 Male, age 72, unknown 146.4
Ventral tegmental area
nTPM: 166.7
2218 Male, age 76, both hemispheres 181.0
1915 Female, age 42, unknown 178.0
2410 Female, age 72, unknown 177.1
2223 Female, age 72, unknown 155.4
2021 Male, age 53, unknown 154.8
1942 Male, age 51, unknown 154.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 198.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 198.6
Samples: 139

Max nTPM: 477.6
Min nTPM: 75.4
Std nTPM: 76.5
Median nTPM: 187.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 477.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 413.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 409.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 361.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 347.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 338.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 338.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 338.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 310.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 310.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 308.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.0
FF:10158-103A5 76 years, female 115.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 50.9
Min nTPM: 29.4
Sample A Female 30.0
Sample B Female 30.5
Sample C Male 50.9
Sample D Male 29.4
Periaqueductal gray
nTPM: 24.5
Samples: 3

Max nTPM: 33.7
Min nTPM: 19.4
Sample B Female 20.5
Sample C Male 33.7
Sample D Male 19.4
Substantia nigra
nTPM: 35.1
Samples: 4

Max nTPM: 50.3
Min nTPM: 17.6
Sample A Female 50.3
Sample B Female 25.1
Sample C Male 47.4
Sample D Male 17.6
Superior colliculi
nTPM: 33.5
Samples: 4

Max nTPM: 45.9
Min nTPM: 16.7
Sample A Female 41.8
Sample B Female 16.7
Sample C Male 45.9
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 181.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 181.8
Samples: 4

Max nTPM: 203.2
Min nTPM: 172.2
Sample A Male 203.2
Sample B Male 176.6
Sample C Female 172.2
Sample D Female 175.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71529917 Antisense, RP_050915_01_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.