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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:174.5 nTPM
HPA:174.5 nTPM
GTEx:240.5 nTPM
FANTOM5:190.9 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:218.4 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 174.5
Sample id Sample description nTPM
Amygdala
nTPM: 164.7
2814 Male, age 76, right hemisphere 190.6
2695 Female, age 67, right hemisphere 160.6
2517 Female, age 94, left hemisphere 159.2
1987 Female, age 91, left hemisphere 157.2
2514 Male, age 75, right hemisphere 155.8
Basal amygdala
nTPM: 171.5
2243 Female, age 91, right hemisphere 180.4
1955 Male, age 76, both hemispheres 176.6
2685 Female, age 94, left hemisphere 175.5
2609 Male, age 75, right hemisphere 168.6
2110 Male, age 80, left hemisphere 165.7
2827 Female, age 67, right hemisphere 162.4
Central amygdala
nTPM: 174.5
2826 Female, age 94, left hemisphere 183.9
1905 Male, age 76, both hemispheres 183.8
2701 Female, age 91, right hemisphere 173.2
2239 Male, age 80, left hemisphere 169.1
2515 Male, age 75, right hemisphere 162.7
Corticomedial amygdala
nTPM: 166.7
2242 Female, age 91, right hemisphere 184.6
2829 Male, age 80, left hemisphere 174.5
2240 Male, age 76, both hemispheres 166.8
2535 Female, age 67, right hemisphere 163.3
2429 Female, age 94, left hemisphere 157.7
2428 Male, age 75, right hemisphere 153.6
Lateral amygdala
nTPM: 168.9
1883 Male, age 76, both hemispheres 185.7
2534 Female, age 94, left hemisphere 178.7
2255 Female, age 91, right hemisphere 170.1
2516 Male, age 75, right hemisphere 160.3
2830 Female, age 67, right hemisphere 159.6
2256 Male, age 80, left hemisphere 159.0
Stria terminalis, bed nucleus
nTPM: 166.1
1974 Female, age 91, both hemispheres 171.7
2201 Male, age 74, unknown 167.1
2486 Female, age 94, both hemispheres 159.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 240.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 240.5
Samples: 152

Max nTPM: 628.0
Min nTPM: 37.4
Std nTPM: 86.9
Median nTPM: 231.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 628.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 570.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 560.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 523.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 454.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 427.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 395.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 392.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 379.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 379.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 360.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 358.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 354.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 338.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 335.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 333.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 329.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 322.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 316.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 313.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 307.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 305.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 292.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 292.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 292.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 291.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 290.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 289.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 289.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 288.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 285.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 283.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 281.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 281.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 280.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 278.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 276.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 276.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 275.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 272.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 271.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 269.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 268.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 268.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 268.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 267.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 265.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 264.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 264.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 263.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 261.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 260.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 258.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 257.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 257.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 256.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 256.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 254.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 253.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 253.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 250.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 249.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 248.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 248.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 247.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 245.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 245.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 245.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 244.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 240.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 239.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 238.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 236.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 235.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 233.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 232.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 231.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 230.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 230.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 229.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 228.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 228.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 227.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 227.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 225.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 222.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 221.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 220.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 217.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 216.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 215.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 212.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 212.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 211.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 209.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 208.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 207.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 204.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 204.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 204.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 203.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 202.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 201.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 197.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 197.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 196.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 195.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 193.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 191.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 188.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 188.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 185.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 185.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 184.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 184.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 183.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 183.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 182.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 181.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 179.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 176.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 172.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 167.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 165.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 165.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 163.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 162.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 161.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 160.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 160.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 157.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 157.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 155.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 153.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 149.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 148.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 147.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 145.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 143.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 138.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 137.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 127.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 125.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 123.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 123.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 122.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 113.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 98.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 37.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 190.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 190.9
FF:10151-102I7 76 years, female 190.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.6
Pig sample Sample description nTPM
Amygdala
nTPM: 24.6
Samples: 4

Max nTPM: 40.2
Min nTPM: 16.7
Sample A Female 40.2
Sample B Female 18.5
Sample C Male 22.8
Sample D Male 16.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 218.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 218.4
Samples: 4

Max nTPM: 226.1
Min nTPM: 213.1
Sample A Male 214.1
Sample B Male 213.1
Sample C Female 226.1
Sample D Female 220.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
71529917 Antisense, RP_050915_01_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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