MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.5 nTPM
HPA:80.5 nTPM
GTEx:112.7 nTPM
FANTOM5:94.4 Scaled Tags Per Million
Mouse:35.7 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.9
2019 Male, age 18, unknown 91.8
2586 Male, age 75, left hemisphere 84.4
2666 Male, age 74, left hemisphere 82.5
2828 Female, age 72, unknown 72.3
1870 Female, age 42, unknown 67.6
1830 Male, age 51, unknown 67.2
1833 Male, age 53, unknown 62.9
2411 Female, age 72, unknown 61.3
1827 Male, age 72, unknown 60.6
2219 Male, age 76, both hemispheres 58.1
Dorsal raphe nucleus
nTPM: 72.6
2047 Male, age 72, unknown 78.6
1828 Male, age 53, unknown 77.6
2298 Female, age 72, unknown 69.9
2750 Male, age 76, both hemispheres 68.6
2016 Female, age 72, unknown 68.1
Inferior colliculus
nTPM: 65.8
1890 Male, age 53, unknown 66.9
2097 Female, age 72, unknown 66.9
2849 Male, age 72, unknown 65.7
1848 Female, age 42, unknown 63.8
Median raphe nucleus
nTPM: 80.5
2220 Male, age 76, midline 80.5
Pedunculopontine tegmental nucleus
nTPM: 78.6
2338 Male, age 61, both hemispheres 97.8
2334 Male, age 80, both hemispheres 76.6
1921 Female, age 85, both hemispheres 61.6
Periaquaductal grey, anterior
nTPM: 63.8
1795 Male, age 51, unknown 67.7
1947 Male, age 18, unknown 63.0
2502 Female, age 75, unknown 60.5
Periaquaductal grey, dorsal
nTPM: 68.9
2850 Male, age 76, both hemispheres 73.9
1840 Male, age 53, unknown 68.8
2464 Female, age 72, unknown 67.3
1831 Male, age 72, unknown 65.6
Periaquaductal grey, lateral
nTPM: 65.3
2140 Male, age 76, both hemispheres 71.5
2272 Male, age 74, both hemispheres 65.6
2053 Male, age 18, unknown 58.8
Pretectal area
nTPM: 68.0
1817 Female, age 42, unknown 88.9
2007 Male, age 72, unknown 83.9
1944 Female, age 72, unknown 73.1
1815 Male, age 53, unknown 71.6
2273 Male, age 74, both hemispheres 66.4
2224 Female, age 72, unknown 63.7
1816 Male, age 51, unknown 62.5
2825 Male, age 18, unknown 61.0
2316 Male, age 76, right hemisphere 60.9
2407 Male, age 75, both hemispheres 58.0
2667 Female, age 75, unknown 57.5
Red nucleus
nTPM: 68.4
2785 Male, age 18, unknown 80.3
2584 Male, age 75, left hemisphere 77.2
2725 Female, age 75, unknown 75.0
2503 Female, age 72, unknown 72.5
2588 Male, age 74, left hemisphere 67.5
2769 Male, age 72, unknown 67.4
2227 Male, age 72, unknown 67.0
1865 Male, age 51, unknown 66.4
2823 Male, age 76, right hemisphere 63.1
1954 Female, age 42, unknown 62.7
1821 Female, age 72, unknown 62.6
1904 Male, age 53, unknown 59.7
Substantia nigra
nTPM: 77.2
2590 Female, age 75, unknown 83.6
2583 Male, age 75, right hemisphere 81.7
2665 Male, age 74, both hemispheres 81.0
1916 Female, age 42, unknown 78.9
1851 Male, age 51, unknown 78.4
1941 Male, age 53, unknown 78.4
2409 Female, age 72, unknown 76.5
2699 Male, age 18, unknown 74.7
1889 Female, age 72, unknown 72.2
2241 Male, age 72, unknown 66.0
Superior colliculus
nTPM: 63.9
1839 Male, age 51, unknown 70.2
2587 Male, age 74, left hemisphere 69.3
1995 Male, age 72, unknown 68.4
2668 Female, age 75, unknown 66.2
1913 Female, age 42, unknown 64.9
2087 Female, age 72, unknown 62.9
2664 Male, age 75, both hemispheres 62.8
1796 Male, age 53, unknown 62.5
1895 Male, age 76, right hemisphere 57.8
2261 Male, age 18, unknown 54.3
Ventral tegmental area
nTPM: 69.6
2021 Male, age 53, unknown 76.0
1915 Female, age 42, unknown 74.3
2410 Female, age 72, unknown 71.8
1942 Male, age 51, unknown 66.0
2218 Male, age 76, both hemispheres 64.8
2223 Female, age 72, unknown 64.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.7
Samples: 139

Max nTPM: 247.7
Min nTPM: 34.5
Std nTPM: 38.3
Median nTPM: 106.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 247.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 242.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 228.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 222.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 212.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 205.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 193.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 193.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 192.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 173.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 171.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.4
FF:10158-103A5 76 years, female 94.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 41.2
Min nTPM: 31.8
Sample A Male 41.2
Sample B Male 31.8
Sample C Female 32.3
Sample D Female 37.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
72472769 Antisense, RP_051101_02_D01, Mouse strain C57BL/6J (56 days, male) 4.7
69568974 Antisense, RP_050426_03_B12, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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