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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:203.5 nTPM
HPA:132.0 nTPM
GTEx:203.5 nTPM
FANTOM5:62.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA064006
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 132.0
overview
Male, age 65
Small intestine sample 232
nTPM: 123.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 151.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 131.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 121.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 203.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 203.5
Samples: 187

Max nTPM: 482.5
Min nTPM: 101.8
Std nTPM: 62.1
Median nTPM: 198.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 482.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 446.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 398.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 364.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 345.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 343.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 334.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 323.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 319.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 317.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 307.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 305.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 304.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 302.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 299.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 296.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 294.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 293.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 290.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 284.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 280.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 278.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 270.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 268.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 267.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 264.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 264.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 263.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 257.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 256.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 252.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 252.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 250.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 248.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 243.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 243.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 242.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 239.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 238.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 237.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 233.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 232.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 232.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 231.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 231.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 230.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 229.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 228.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 228.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 228.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 227.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 227.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 227.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 225.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 224.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 224.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 224.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 223.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 221.8
GTEX-1192X-2526-SM-59868 50-59 years, male 221.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 220.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 219.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 219.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 217.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 217.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 217.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 214.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 213.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 213.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 213.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 213.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 210.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 210.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 210.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 210.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 209.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 208.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 207.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 206.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 206.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 205.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 205.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 204.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 202.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 202.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 201.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 201.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 201.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 200.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 200.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 200.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 200.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 199.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 198.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 198.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 195.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 195.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 195.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 195.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 193.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 193.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 193.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 193.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 192.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 191.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 191.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 191.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 190.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 189.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 189.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 187.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 185.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 184.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 183.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 182.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 181.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 181.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 180.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 179.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 177.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 176.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 175.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 175.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 175.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 173.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 172.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 172.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 172.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 172.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 171.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 170.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 169.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 168.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 166.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 165.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 163.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 163.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 162.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 162.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 160.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 160.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 159.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 156.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 152.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 151.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 150.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 150.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 148.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 147.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 146.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 145.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 145.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 145.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 145.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 143.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 142.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 142.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 141.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 140.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 139.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 139.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 139.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 139.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 139.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 138.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 137.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 136.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 135.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 133.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 132.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 132.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 129.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 124.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 123.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 123.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 123.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 123.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 122.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 121.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 119.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 117.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 114.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 112.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 112.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 107.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 104.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 101.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 62.5
FF:10024-101D6 15,40,85 years, mixed 62.5

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