BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.4 nTPM
HPA:4.4 nTPM
GTEx:72.9 nTPM
FANTOM5:1.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA046697Antibody HPA061174Antibody CAB025192
Glial cells LowLowMedium
Neuronal cells HighMediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.3
1781 Male, age 74, unknown 4.8
2289 Male, age 61, right hemisphere 4.5
1854 Male, age 80, left hemisphere 4.4
2481 Female, age 94, left hemisphere 4.4
2288 Male, age 75, left hemisphere 4.2
1857 Female, age 85, left hemisphere 4.1
2290 Female, age 72, unknown 4.1
2846 Female, age 79, unknown 4.1
Claustrum
nTPM: 4.3
2568 Male, age 61, both hemispheres 4.6
2284 Female, age 91, both hemispheres 4.5
1956 Male, age 74, unknown 4.3
2196 Female, age 79, unknown 4.3
2198 Male, age 80, both hemispheres 4.3
2292 Female, age 85, both hemispheres 4.2
2392 Female, age 94, both hemispheres 4.2
2491 Male, age 75, both hemispheres 4.2
2645 Female, age 72, unknown 4.1
Globus pallidus, externus
nTPM: 4.2
2772 Female, age 79, unknown 4.4
1996 Male, age 80, right hemisphere 4.2
2395 Male, age 75, both hemispheres 4.2
2646 Male, age 61, right hemisphere 4.2
2567 Female, age 72, unknown 4.1
Globus pallidus, internus
nTPM: 4.3
2287 Male, age 75, right hemisphere 4.5
2037 Male, age 80, right hemisphere 4.4
2778 Female, age 91, both hemispheres 4.4
2483 Female, age 94, right hemisphere 4.3
1818 Male, age 74, unknown 4.1
2111 Female, age 85, right hemisphere 4.1
2566 Female, age 72, unknown 4.1
Nucleus accumbens
nTPM: 4.3
1856 Female, age 91, right hemisphere 4.8
2286 Male, age 75, left hemisphere 4.3
2698 Female, age 72, unknown 4.3
2824 Male, age 61, right hemisphere 4.3
1806 Female, age 85, left hemisphere 4.2
2391 Female, age 94, left hemisphere 4.2
1783 Male, age 74, unknown 4.1
2732 Male, age 80, right hemisphere 4.1
Nucleus basalis of Meynert
nTPM: 4.2
2393 Male, age 80, right hemisphere 4.3
2569 Male, age 61, both hemispheres 4.3
2484 Female, age 94, left hemisphere 4.2
2821 Male, age 75, both hemispheres 4.2
Nucleus of the diagonal band
nTPM: 4.4
1812 Female, age 91, both hemispheres 4.8
2029 Male, age 61, right hemisphere 4.4
1979 Male, age 74, unknown 4.3
2775 Male, age 80, right hemisphere 4.3
2195 Female, age 85, both hemispheres 4.1
Olfactory tubercle
nTPM: 4.4
1846 Male, age 80, right hemisphere 4.6
1998 Female, age 91, both hemispheres 4.5
2487 Female, age 94, left hemisphere 4.2
2856 Male, age 75, right hemisphere 4.2
Putamen
nTPM: 4.3
1838 Male, age 80, right hemisphere 4.5
2466 Female, age 79, unknown 4.4
2482 Female, age 94, left hemisphere 4.4
2647 Male, age 75, left hemisphere 4.4
1829 Male, age 74, unknown 4.3
1937 Female, age 91, right hemisphere 4.1
2489 Female, age 72, unknown 4.1
Septal nuclei
nTPM: 4.3
2031 Female, age 72, unknown 4.5
2009 Female, age 91, both hemispheres 4.4
2059 Female, age 85, both hemispheres 4.3
2199 Male, age 80, right hemisphere 4.2
2629 Female, age 94, right hemisphere 4.2
1960 Male, age 74, unknown 4.1
2394 Male, age 61, left hemisphere 4.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 72.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.7
Samples: 246

Max nTPM: 215.7
Min nTPM: 22.7
Std nTPM: 20.0
Median nTPM: 52.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 215.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 106.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 102.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 98.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 96.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 96.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 92.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 91.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 90.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 89.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 89.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 72.9
Samples: 246

Max nTPM: 157.4
Min nTPM: 16.1
Std nTPM: 28.5
Median nTPM: 71.3
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 157.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 154.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 145.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 144.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 137.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 134.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 131.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 130.2
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 125.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 124.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 122.4
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Brain - Putamen (basal ganglia)
Average nTPM: 51.6
Samples: 205

Max nTPM: 112.7
Min nTPM: 19.8
Std nTPM: 18.2
Median nTPM: 47.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 112.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 104.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 96.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 95.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 93.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 89.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 87.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 87.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 86.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 84.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 83.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.6
FF:10164-103B2 76 years, female 0.6
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 1.1
FF:10037-101F1 23-56 years, mixed 1.1
Putamen
Scaled Tags Per Million: 0.4
FF:10176-103C5 60 years, female 0.4

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