BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:13.2 nTPM
FANTOM5:53.1 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:19.1 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023383
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.9
1857 Female, age 85, left hemisphere 15.2
2288 Male, age 75, left hemisphere 15.0
1781 Male, age 74, unknown 14.6
1854 Male, age 80, left hemisphere 14.3
2846 Female, age 79, unknown 13.7
2290 Female, age 72, unknown 13.3
2481 Female, age 94, left hemisphere 13.1
2289 Male, age 61, right hemisphere 12.0
Claustrum
nTPM: 13.5
2491 Male, age 75, both hemispheres 16.0
2392 Female, age 94, both hemispheres 15.3
2196 Female, age 79, unknown 14.7
2198 Male, age 80, both hemispheres 14.4
2284 Female, age 91, both hemispheres 13.7
1956 Male, age 74, unknown 12.8
2568 Male, age 61, both hemispheres 12.7
2292 Female, age 85, both hemispheres 11.5
2645 Female, age 72, unknown 10.8
Globus pallidus, externus
nTPM: 12.7
2772 Female, age 79, unknown 14.4
1996 Male, age 80, right hemisphere 14.0
2395 Male, age 75, both hemispheres 13.9
2567 Female, age 72, unknown 11.0
2646 Male, age 61, right hemisphere 10.1
Globus pallidus, internus
nTPM: 13.4
2778 Female, age 91, both hemispheres 16.9
2287 Male, age 75, right hemisphere 16.5
2483 Female, age 94, right hemisphere 13.7
1818 Male, age 74, unknown 12.4
2037 Male, age 80, right hemisphere 12.3
2111 Female, age 85, right hemisphere 11.1
2566 Female, age 72, unknown 10.8
Nucleus accumbens
nTPM: 14.4
1856 Female, age 91, right hemisphere 16.4
2824 Male, age 61, right hemisphere 15.9
2698 Female, age 72, unknown 15.7
1783 Male, age 74, unknown 14.5
2286 Male, age 75, left hemisphere 14.2
1806 Female, age 85, left hemisphere 13.5
2391 Female, age 94, left hemisphere 12.6
2732 Male, age 80, right hemisphere 12.3
Nucleus basalis of Meynert
nTPM: 12.8
2821 Male, age 75, both hemispheres 15.9
2393 Male, age 80, right hemisphere 13.6
2484 Female, age 94, left hemisphere 12.4
2569 Male, age 61, both hemispheres 9.5
Nucleus of the diagonal band
nTPM: 15.9
2775 Male, age 80, right hemisphere 17.0
1812 Female, age 91, both hemispheres 16.6
1979 Male, age 74, unknown 15.6
2195 Female, age 85, both hemispheres 15.4
2029 Male, age 61, right hemisphere 14.7
Olfactory tubercle
nTPM: 15.1
1846 Male, age 80, right hemisphere 15.5
1998 Female, age 91, both hemispheres 15.3
2487 Female, age 94, left hemisphere 14.9
2856 Male, age 75, right hemisphere 14.6
Putamen
nTPM: 12.8
1838 Male, age 80, right hemisphere 15.0
2466 Female, age 79, unknown 13.7
1937 Female, age 91, right hemisphere 13.5
2482 Female, age 94, left hemisphere 12.7
1829 Male, age 74, unknown 11.9
2647 Male, age 75, left hemisphere 11.6
2489 Female, age 72, unknown 10.8
Septal nuclei
nTPM: 13.7
2031 Female, age 72, unknown 15.6
1960 Male, age 74, unknown 15.0
2629 Female, age 94, right hemisphere 13.9
2009 Female, age 91, both hemispheres 13.0
2059 Female, age 85, both hemispheres 13.0
2394 Male, age 61, left hemisphere 13.0
2199 Male, age 80, right hemisphere 12.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.7
Samples: 246

Max nTPM: 29.2
Min nTPM: 4.5
Std nTPM: 3.3
Median nTPM: 10.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 29.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 25.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 24.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 21.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 20.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 19.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 19.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 19.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 18.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 18.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.2
Samples: 246

Max nTPM: 29.3
Min nTPM: 5.0
Std nTPM: 4.3
Median nTPM: 12.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 29.3
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 28.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 25.7
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 24.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 22.7
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 22.5
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 21.9
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 21.9
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 21.8
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 21.5
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 20.6
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Brain - Putamen (basal ganglia)
Average nTPM: 10.9
Samples: 205

Max nTPM: 21.5
Min nTPM: 5.2
Std nTPM: 3.0
Median nTPM: 10.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 21.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 20.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 18.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 18.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 17.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 17.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 17.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 16.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 16.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 16.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 16.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.9
FF:10164-103B2 76 years, female 33.9
Globus pallidus
Scaled Tags Per Million: 31.5
FF:10161-103A8 76 years, female 31.6
FF:10175-103C4 60 years, female 31.5
Nucleus accumbens
Scaled Tags Per Million: 45.8
FF:10037-101F1 23-56 years, mixed 45.8
Putamen
Scaled Tags Per Million: 53.1
FF:10176-103C5 60 years, female 53.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Caudate
nTPM: 4.8
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.4
Sample A Female 5.0
Sample B Female 4.4
Sample C Male 5.0
Sample D Male 4.8
Putamen
nTPM: 5.4
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.9
Sample A Female 5.8
Sample B Female 4.9
Sample C Male 5.6
Sample D Male 5.2
Septum
nTPM: 5.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.2
Sample A Female 6.1
Sample B Female 5.2
Sample C Male 6.2
Sample D Male 5.2
Ventral pallidum
nTPM: 5.3
Samples: 4

Max nTPM: 5.5
Min nTPM: 5.1
Sample A Female 5.3
Sample B Female 5.1
Sample C Male 5.2
Sample D Male 5.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.1
Samples: 4

Max nTPM: 21.7
Min nTPM: 16.6
Sample A Male 21.2
Sample B Male 17.0
Sample C Female 21.7
Sample D Female 16.6
Septum
nTPM: 18.2
Samples: 4

Max nTPM: 20.8
Min nTPM: 16.3
Sample A Male 16.3
Sample B Male 20.8
Sample C Female 17.9
Sample D Female 17.8
Ventral forebrain
nTPM: 17.7
Samples: 4

Max nTPM: 20.5
Min nTPM: 15.7
Sample A Male 20.5
Sample B Male 17.5
Sample C Female 15.7
Sample D Female 17.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70474905 Antisense, RP_050623_01_C12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
70474905 Antisense, RP_050623_01_C12, Mouse strain C57BL/6J (56 days, male) 0.2

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