MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.1 nTPM
HPA:36.1 nTPM
GTEx:32.5 nTPM
FANTOM5:52.5 Scaled Tags Per Million
Pig:159.7 nTPM
Mouse:134.0 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
2586 Male, age 75, left hemisphere 42.9
1870 Female, age 42, unknown 33.6
2411 Female, age 72, unknown 33.3
1827 Male, age 72, unknown 33.1
2828 Female, age 72, unknown 32.9
1833 Male, age 53, unknown 32.8
2019 Male, age 18, unknown 32.6
1830 Male, age 51, unknown 31.4
2666 Male, age 74, left hemisphere 29.4
2219 Male, age 76, both hemispheres 26.3
Dorsal raphe nucleus
nTPM: 33.8
1828 Male, age 53, unknown 38.4
2016 Female, age 72, unknown 35.7
2298 Female, age 72, unknown 33.5
2047 Male, age 72, unknown 31.1
2750 Male, age 76, both hemispheres 30.3
Inferior colliculus
nTPM: 35.4
2097 Female, age 72, unknown 41.9
1848 Female, age 42, unknown 36.3
1890 Male, age 53, unknown 32.5
2849 Male, age 72, unknown 30.9
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Pedunculopontine tegmental nucleus
nTPM: 30.2
2334 Male, age 80, both hemispheres 34.5
1921 Female, age 85, both hemispheres 30.8
2338 Male, age 61, both hemispheres 25.4
Periaquaductal grey, anterior
nTPM: 31.3
2502 Female, age 75, unknown 34.3
1947 Male, age 18, unknown 31.4
1795 Male, age 51, unknown 28.2
Periaquaductal grey, dorsal
nTPM: 30.2
2464 Female, age 72, unknown 33.7
1840 Male, age 53, unknown 30.5
2850 Male, age 76, both hemispheres 29.4
1831 Male, age 72, unknown 27.3
Periaquaductal grey, lateral
nTPM: 31.4
2053 Male, age 18, unknown 34.0
2272 Male, age 74, both hemispheres 31.5
2140 Male, age 76, both hemispheres 28.9
Pretectal area
nTPM: 36.1
2007 Male, age 72, unknown 43.9
1815 Male, age 53, unknown 43.6
1817 Female, age 42, unknown 43.6
1816 Male, age 51, unknown 40.1
2273 Male, age 74, both hemispheres 35.0
2224 Female, age 72, unknown 34.7
1944 Female, age 72, unknown 34.3
2667 Female, age 75, unknown 33.6
2316 Male, age 76, right hemisphere 30.9
2825 Male, age 18, unknown 30.5
2407 Male, age 75, both hemispheres 26.4
Red nucleus
nTPM: 32.6
1821 Female, age 72, unknown 39.0
1954 Female, age 42, unknown 35.3
2503 Female, age 72, unknown 34.7
2785 Male, age 18, unknown 33.7
2227 Male, age 72, unknown 33.5
2769 Male, age 72, unknown 33.4
1865 Male, age 51, unknown 33.2
1904 Male, age 53, unknown 33.0
2823 Male, age 76, right hemisphere 31.2
2725 Female, age 75, unknown 30.5
2588 Male, age 74, left hemisphere 27.2
2584 Male, age 75, left hemisphere 26.8
Substantia nigra
nTPM: 31.5
1889 Female, age 72, unknown 41.4
1916 Female, age 42, unknown 34.4
2241 Male, age 72, unknown 33.3
1851 Male, age 51, unknown 33.0
2409 Female, age 72, unknown 32.2
2583 Male, age 75, right hemisphere 31.7
2699 Male, age 18, unknown 29.5
2590 Female, age 75, unknown 28.4
1941 Male, age 53, unknown 26.2
2665 Male, age 74, both hemispheres 25.2
Superior colliculus
nTPM: 32.4
2668 Female, age 75, unknown 36.3
2261 Male, age 18, unknown 34.8
1895 Male, age 76, right hemisphere 34.3
2587 Male, age 74, left hemisphere 33.6
1839 Male, age 51, unknown 32.6
1796 Male, age 53, unknown 31.8
2087 Female, age 72, unknown 31.2
1995 Male, age 72, unknown 31.0
1913 Female, age 42, unknown 30.5
2664 Male, age 75, both hemispheres 28.3
Ventral tegmental area
nTPM: 30.7
2410 Female, age 72, unknown 36.3
1915 Female, age 42, unknown 33.0
2218 Male, age 76, both hemispheres 30.1
1942 Male, age 51, unknown 28.5
2223 Female, age 72, unknown 28.5
2021 Male, age 53, unknown 27.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.5
Samples: 139

Max nTPM: 55.7
Min nTPM: 13.1
Std nTPM: 9.1
Median nTPM: 31.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 55.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 52.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 52.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 50.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 49.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 48.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 47.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 47.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 46.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 46.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.5
FF:10158-103A5 76 years, female 52.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 159.7
Pig sample Sample description nTPM
Midbrain
nTPM: 159.7
Samples: 4

Max nTPM: 315.9
Min nTPM: 90.5
Sample A Female 315.9
Sample B Female 94.0
Sample C Male 138.5
Sample D Male 90.5
Periaqueductal gray
nTPM: 105.2
Samples: 3

Max nTPM: 113.5
Min nTPM: 99.9
Sample B Female 99.9
Sample C Male 113.5
Sample D Male 102.3
Substantia nigra
nTPM: 132.2
Samples: 4

Max nTPM: 160.3
Min nTPM: 114.1
Sample A Female 160.3
Sample B Female 116.9
Sample C Male 114.1
Sample D Male 137.5
Superior colliculi
nTPM: 152.7
Samples: 4

Max nTPM: 159.6
Min nTPM: 143.1
Sample A Female 156.6
Sample B Female 159.6
Sample C Male 143.1
Sample D Male 151.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.1
Samples: 4

Max nTPM: 144.7
Min nTPM: 127.6
Sample A Male 127.6
Sample B Male 132.8
Sample C Female 144.7
Sample D Female 131.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
75651225 Antisense, RP_060518_01_D03, Mouse strain C57BL/6J (56 days, male) 8.3
532742 Antisense, RP_040825_02_A05, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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