MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.7 nTPM
HPA:41.7 nTPM
GTEx:45.1 nTPM
FANTOM5:150.6 Scaled Tags Per Million
Pig:132.7 nTPM
Mouse:302.0 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.6
1870 Female, age 42, unknown 36.1
1827 Male, age 72, unknown 33.5
2411 Female, age 72, unknown 33.3
2219 Male, age 76, both hemispheres 32.2
1833 Male, age 53, unknown 31.3
2828 Female, age 72, unknown 31.0
1830 Male, age 51, unknown 28.6
2019 Male, age 18, unknown 28.1
2666 Male, age 74, left hemisphere 27.2
2586 Male, age 75, left hemisphere 24.4
Dorsal raphe nucleus
nTPM: 34.7
2298 Female, age 72, unknown 42.2
2047 Male, age 72, unknown 37.6
2750 Male, age 76, both hemispheres 35.2
1828 Male, age 53, unknown 30.0
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 34.0
2097 Female, age 72, unknown 38.2
2849 Male, age 72, unknown 34.2
1848 Female, age 42, unknown 33.7
1890 Male, age 53, unknown 30.1
Median raphe nucleus
nTPM: 41.7
2220 Male, age 76, midline 41.7
Pedunculopontine tegmental nucleus
nTPM: 36.1
2334 Male, age 80, both hemispheres 39.3
1921 Female, age 85, both hemispheres 37.7
2338 Male, age 61, both hemispheres 31.2
Periaquaductal grey, anterior
nTPM: 31.9
1947 Male, age 18, unknown 33.4
1795 Male, age 51, unknown 31.4
2502 Female, age 75, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 31.1
2850 Male, age 76, both hemispheres 35.4
1840 Male, age 53, unknown 34.4
1831 Male, age 72, unknown 28.7
2464 Female, age 72, unknown 26.0
Periaquaductal grey, lateral
nTPM: 30.2
2272 Male, age 74, both hemispheres 31.8
2053 Male, age 18, unknown 29.9
2140 Male, age 76, both hemispheres 29.0
Pretectal area
nTPM: 35.3
1817 Female, age 42, unknown 42.6
1816 Male, age 51, unknown 40.8
1944 Female, age 72, unknown 40.3
2007 Male, age 72, unknown 38.1
2224 Female, age 72, unknown 37.3
1815 Male, age 53, unknown 35.2
2273 Male, age 74, both hemispheres 34.3
2667 Female, age 75, unknown 33.6
2825 Male, age 18, unknown 33.1
2407 Male, age 75, both hemispheres 28.3
2316 Male, age 76, right hemisphere 24.3
Red nucleus
nTPM: 28.7
1821 Female, age 72, unknown 33.7
2725 Female, age 75, unknown 33.0
2785 Male, age 18, unknown 30.1
1954 Female, age 42, unknown 29.8
1865 Male, age 51, unknown 29.3
2227 Male, age 72, unknown 29.3
2503 Female, age 72, unknown 29.3
1904 Male, age 53, unknown 28.5
2769 Male, age 72, unknown 28.4
2823 Male, age 76, right hemisphere 27.7
2584 Male, age 75, left hemisphere 24.5
2588 Male, age 74, left hemisphere 20.9
Substantia nigra
nTPM: 34.3
1916 Female, age 42, unknown 43.0
1889 Female, age 72, unknown 40.0
1941 Male, age 53, unknown 37.0
1851 Male, age 51, unknown 36.9
2699 Male, age 18, unknown 34.7
2409 Female, age 72, unknown 31.5
2583 Male, age 75, right hemisphere 31.3
2590 Female, age 75, unknown 30.2
2241 Male, age 72, unknown 29.9
2665 Male, age 74, both hemispheres 28.3
Superior colliculus
nTPM: 31.2
2587 Male, age 74, left hemisphere 36.0
1796 Male, age 53, unknown 34.2
1895 Male, age 76, right hemisphere 33.5
2087 Female, age 72, unknown 33.5
2668 Female, age 75, unknown 32.2
2261 Male, age 18, unknown 31.8
1913 Female, age 42, unknown 30.3
1839 Male, age 51, unknown 28.1
1995 Male, age 72, unknown 27.9
2664 Male, age 75, both hemispheres 24.6
Ventral tegmental area
nTPM: 35.2
2218 Male, age 76, both hemispheres 39.4
2410 Female, age 72, unknown 38.2
2223 Female, age 72, unknown 35.4
1915 Female, age 42, unknown 33.5
2021 Male, age 53, unknown 32.6
1942 Male, age 51, unknown 31.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.1
Samples: 139

Max nTPM: 82.3
Min nTPM: 30.9
Std nTPM: 9.0
Median nTPM: 44.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 80.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 73.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 71.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 68.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 67.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 65.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 61.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 60.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 58.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 54.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 150.6
FF:10158-103A5 76 years, female 150.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 132.7
Pig sample Sample description nTPM
Midbrain
nTPM: 132.7
Samples: 4

Max nTPM: 144.5
Min nTPM: 113.9
Sample A Female 139.6
Sample B Female 113.9
Sample C Male 144.5
Sample D Male 132.6
Periaqueductal gray
nTPM: 104.5
Samples: 3

Max nTPM: 115.7
Min nTPM: 98.2
Sample B Female 98.2
Sample C Male 115.7
Sample D Male 99.6
Substantia nigra
nTPM: 117.4
Samples: 4

Max nTPM: 149.6
Min nTPM: 93.7
Sample A Female 149.6
Sample B Female 100.8
Sample C Male 125.6
Sample D Male 93.7
Superior colliculi
nTPM: 127.9
Samples: 4

Max nTPM: 146.8
Min nTPM: 91.9
Sample A Female 146.8
Sample B Female 91.9
Sample C Male 146.1
Sample D Male 126.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 302.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 302.0
Samples: 4

Max nTPM: 311.3
Min nTPM: 291.6
Sample A Male 291.6
Sample B Male 311.3
Sample C Female 305.8
Sample D Female 299.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
79394344 Antisense, RP_071018_03_D02, Mouse strain C57BL/6J (56 days, male) 9.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.