MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:140.1 nTPM
HPA:140.1 nTPM
GTEx:211.3 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:434.2 nTPM
Mouse:447.4 nTPM
Allen mouse:17.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 140.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.5
2219 Male, age 76, both hemispheres 114.7
1827 Male, age 72, unknown 85.4
2666 Male, age 74, left hemisphere 81.9
2411 Female, age 72, unknown 72.6
2828 Female, age 72, unknown 54.2
2019 Male, age 18, unknown 50.2
1870 Female, age 42, unknown 49.2
1833 Male, age 53, unknown 36.3
1830 Male, age 51, unknown 33.1
2586 Male, age 75, left hemisphere 27.4
Dorsal raphe nucleus
nTPM: 79.4
2298 Female, age 72, unknown 109.0
2750 Male, age 76, both hemispheres 99.3
2047 Male, age 72, unknown 85.2
1828 Male, age 53, unknown 76.2
2016 Female, age 72, unknown 27.4
Inferior colliculus
nTPM: 40.8
2097 Female, age 72, unknown 46.2
1848 Female, age 42, unknown 45.5
2849 Male, age 72, unknown 39.1
1890 Male, age 53, unknown 32.6
Median raphe nucleus
nTPM: 140.1
2220 Male, age 76, midline 140.1
Pedunculopontine tegmental nucleus
nTPM: 102.3
2334 Male, age 80, both hemispheres 122.7
1921 Female, age 85, both hemispheres 112.3
2338 Male, age 61, both hemispheres 71.7
Periaquaductal grey, anterior
nTPM: 57.1
1795 Male, age 51, unknown 65.8
1947 Male, age 18, unknown 61.7
2502 Female, age 75, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 41.1
2850 Male, age 76, both hemispheres 55.4
1840 Male, age 53, unknown 47.3
1831 Male, age 72, unknown 30.9
2464 Female, age 72, unknown 30.7
Periaquaductal grey, lateral
nTPM: 28.9
2053 Male, age 18, unknown 31.2
2140 Male, age 76, both hemispheres 27.9
2272 Male, age 74, both hemispheres 27.7
Pretectal area
nTPM: 69.5
1944 Female, age 72, unknown 122.5
1816 Male, age 51, unknown 108.4
2007 Male, age 72, unknown 98.4
1817 Female, age 42, unknown 96.6
2224 Female, age 72, unknown 87.0
1815 Male, age 53, unknown 74.2
2825 Male, age 18, unknown 54.8
2667 Female, age 75, unknown 46.9
2407 Male, age 75, both hemispheres 38.4
2316 Male, age 76, right hemisphere 23.4
2273 Male, age 74, both hemispheres 13.3
Red nucleus
nTPM: 30.0
1821 Female, age 72, unknown 57.7
2584 Male, age 75, left hemisphere 43.1
2785 Male, age 18, unknown 42.8
1954 Female, age 42, unknown 35.2
2823 Male, age 76, right hemisphere 34.9
1865 Male, age 51, unknown 28.8
2227 Male, age 72, unknown 26.6
2769 Male, age 72, unknown 26.2
2725 Female, age 75, unknown 24.3
1904 Male, age 53, unknown 19.0
2503 Female, age 72, unknown 10.8
2588 Male, age 74, left hemisphere 10.5
Substantia nigra
nTPM: 90.5
1916 Female, age 42, unknown 166.3
1941 Male, age 53, unknown 128.9
2665 Male, age 74, both hemispheres 105.1
2241 Male, age 72, unknown 103.0
1851 Male, age 51, unknown 95.1
2409 Female, age 72, unknown 94.8
1889 Female, age 72, unknown 91.2
2699 Male, age 18, unknown 58.0
2590 Female, age 75, unknown 37.4
2583 Male, age 75, right hemisphere 25.1
Superior colliculus
nTPM: 53.4
2668 Female, age 75, unknown 162.4
2087 Female, age 72, unknown 79.1
1796 Male, age 53, unknown 66.9
1895 Male, age 76, right hemisphere 57.5
2261 Male, age 18, unknown 53.0
1839 Male, age 51, unknown 41.2
1913 Female, age 42, unknown 29.0
2664 Male, age 75, both hemispheres 18.3
2587 Male, age 74, left hemisphere 16.8
1995 Male, age 72, unknown 10.3
Ventral tegmental area
nTPM: 79.5
2218 Male, age 76, both hemispheres 131.4
2410 Female, age 72, unknown 99.5
1915 Female, age 42, unknown 98.6
1942 Male, age 51, unknown 52.7
2021 Male, age 53, unknown 51.4
2223 Female, age 72, unknown 43.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 211.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 211.3
Samples: 139

Max nTPM: 1143.4
Min nTPM: 3.4
Std nTPM: 217.9
Median nTPM: 138.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1143.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1009.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 938.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 898.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 783.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 727.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 657.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 648.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 521.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 504.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 498.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 434.2
Pig sample Sample description nTPM
Midbrain
nTPM: 365.8
Samples: 4

Max nTPM: 543.0
Min nTPM: 96.7
Sample A Female 96.7
Sample B Female 376.9
Sample C Male 543.0
Sample D Male 446.4
Periaqueductal gray
nTPM: 322.9
Samples: 3

Max nTPM: 424.3
Min nTPM: 265.4
Sample B Female 279.1
Sample C Male 424.3
Sample D Male 265.4
Substantia nigra
nTPM: 434.2
Samples: 4

Max nTPM: 795.8
Min nTPM: 100.0
Sample A Female 795.8
Sample B Female 277.1
Sample C Male 564.0
Sample D Male 100.0
Superior colliculi
nTPM: 428.2
Samples: 4

Max nTPM: 625.1
Min nTPM: 207.9
Sample A Female 512.1
Sample B Female 207.9
Sample C Male 625.1
Sample D Male 367.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 447.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 447.4
Samples: 4

Max nTPM: 459.3
Min nTPM: 434.2
Sample A Male 434.2
Sample B Male 459.3
Sample C Female 437.4
Sample D Female 458.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.5
74819695 Antisense, RP_060315_02_H11, Mouse strain C57BL/6J (56 days, male) 17.6
69173415 Antisense, RP_050329_01_E10, Mouse strain C57BL/6J (56 days, male) 17.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.