MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.8 nTPM
HPA:49.8 nTPM
GTEx:68.8 nTPM
FANTOM5:116.0 Scaled Tags Per Million
Pig:51.8 nTPM
Mouse:74.8 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
1870 Female, age 42, unknown 50.4
1833 Male, age 53, unknown 48.0
2219 Male, age 76, both hemispheres 47.2
2019 Male, age 18, unknown 47.1
1827 Male, age 72, unknown 45.8
2411 Female, age 72, unknown 45.7
1830 Male, age 51, unknown 45.6
2828 Female, age 72, unknown 43.3
2666 Male, age 74, left hemisphere 42.9
2586 Male, age 75, left hemisphere 41.0
Dorsal raphe nucleus
nTPM: 46.5
2750 Male, age 76, both hemispheres 48.4
2298 Female, age 72, unknown 47.6
1828 Male, age 53, unknown 46.5
2016 Female, age 72, unknown 45.2
2047 Male, age 72, unknown 45.0
Inferior colliculus
nTPM: 48.0
2097 Female, age 72, unknown 50.3
1848 Female, age 42, unknown 48.2
1890 Male, age 53, unknown 46.7
2849 Male, age 72, unknown 46.7
Median raphe nucleus
nTPM: 46.4
2220 Male, age 76, midline 46.4
Pedunculopontine tegmental nucleus
nTPM: 49.8
2334 Male, age 80, both hemispheres 51.0
1921 Female, age 85, both hemispheres 50.4
2338 Male, age 61, both hemispheres 48.1
Periaquaductal grey, anterior
nTPM: 45.5
1947 Male, age 18, unknown 48.7
2502 Female, age 75, unknown 44.3
1795 Male, age 51, unknown 43.5
Periaquaductal grey, dorsal
nTPM: 45.6
2850 Male, age 76, both hemispheres 48.2
1840 Male, age 53, unknown 45.4
2464 Female, age 72, unknown 44.4
1831 Male, age 72, unknown 44.3
Periaquaductal grey, lateral
nTPM: 45.0
2053 Male, age 18, unknown 45.5
2272 Male, age 74, both hemispheres 45.0
2140 Male, age 76, both hemispheres 44.5
Pretectal area
nTPM: 47.5
1944 Female, age 72, unknown 51.6
1817 Female, age 42, unknown 49.7
2224 Female, age 72, unknown 49.7
1816 Male, age 51, unknown 49.2
2667 Female, age 75, unknown 48.7
1815 Male, age 53, unknown 48.6
2007 Male, age 72, unknown 47.9
2316 Male, age 76, right hemisphere 45.8
2273 Male, age 74, both hemispheres 45.3
2825 Male, age 18, unknown 44.5
2407 Male, age 75, both hemispheres 41.3
Red nucleus
nTPM: 47.4
1821 Female, age 72, unknown 52.8
1954 Female, age 42, unknown 49.7
2725 Female, age 75, unknown 49.4
1865 Male, age 51, unknown 48.8
1904 Male, age 53, unknown 48.7
2823 Male, age 76, right hemisphere 48.5
2503 Female, age 72, unknown 47.3
2227 Male, age 72, unknown 46.8
2769 Male, age 72, unknown 46.2
2785 Male, age 18, unknown 45.6
2588 Male, age 74, left hemisphere 43.2
2584 Male, age 75, left hemisphere 41.6
Substantia nigra
nTPM: 48.1
1889 Female, age 72, unknown 52.8
2241 Male, age 72, unknown 52.2
1916 Female, age 42, unknown 49.9
1851 Male, age 51, unknown 49.1
1941 Male, age 53, unknown 48.2
2699 Male, age 18, unknown 48.2
2409 Female, age 72, unknown 46.9
2590 Female, age 75, unknown 45.4
2665 Male, age 74, both hemispheres 45.3
2583 Male, age 75, right hemisphere 42.5
Superior colliculus
nTPM: 46.3
1895 Male, age 76, right hemisphere 49.0
1913 Female, age 42, unknown 48.4
2587 Male, age 74, left hemisphere 48.2
1995 Male, age 72, unknown 47.0
2087 Female, age 72, unknown 46.9
2668 Female, age 75, unknown 46.4
1839 Male, age 51, unknown 45.5
1796 Male, age 53, unknown 44.9
2261 Male, age 18, unknown 44.9
2664 Male, age 75, both hemispheres 41.9
Ventral tegmental area
nTPM: 47.7
2223 Female, age 72, unknown 50.1
2218 Male, age 76, both hemispheres 49.3
1915 Female, age 42, unknown 48.0
2410 Female, age 72, unknown 48.0
1942 Male, age 51, unknown 45.9
2021 Male, age 53, unknown 44.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.8
Samples: 139

Max nTPM: 125.7
Min nTPM: 43.7
Std nTPM: 11.7
Median nTPM: 66.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 125.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 106.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 97.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 96.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 92.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 91.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 89.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 89.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 87.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 86.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 86.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.0
FF:10158-103A5 76 years, female 116.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.8
Pig sample Sample description nTPM
Midbrain
nTPM: 48.6
Samples: 4

Max nTPM: 54.5
Min nTPM: 43.4
Sample A Female 43.4
Sample B Female 47.7
Sample C Male 54.5
Sample D Male 48.9
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 40.0
Min nTPM: 31.5
Sample B Female 31.5
Sample C Male 40.0
Sample D Male 35.9
Substantia nigra
nTPM: 42.9
Samples: 4

Max nTPM: 65.5
Min nTPM: 23.7
Sample A Female 65.5
Sample B Female 37.8
Sample C Male 44.4
Sample D Male 23.7
Superior colliculi
nTPM: 51.8
Samples: 4

Max nTPM: 58.7
Min nTPM: 45.2
Sample A Female 57.9
Sample B Female 45.4
Sample C Male 58.7
Sample D Male 45.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 82.7
Min nTPM: 64.7
Sample A Male 78.9
Sample B Male 82.7
Sample C Female 64.7
Sample D Female 72.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
323597 Antisense, RP_040609_01_H01, Mouse strain C57BL/6J (56 days, male) 3.7
68203507 Antisense, RP_041208_01_E03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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