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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:61.1 nTPM
HPA:61.1 nTPM
GTEx:91.4 nTPM
FANTOM5:174.6 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 61.1
Sample id Sample description nTPM
Amygdala
nTPM: 49.9
2814 Male, age 76, right hemisphere 226.5
2695 Female, age 67, right hemisphere 17.9
2517 Female, age 94, left hemisphere 5.0
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
Basal amygdala
nTPM: 51.8
1955 Male, age 76, both hemispheres 108.6
2243 Female, age 91, right hemisphere 99.0
2110 Male, age 80, left hemisphere 52.4
2685 Female, age 94, left hemisphere 45.0
2827 Female, age 67, right hemisphere 5.9
2609 Male, age 75, right hemisphere 0.0
Central amygdala
nTPM: 59.0
1905 Male, age 76, both hemispheres 219.6
2239 Male, age 80, left hemisphere 57.5
2701 Female, age 91, right hemisphere 18.2
2515 Male, age 75, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 43.8
2240 Male, age 76, both hemispheres 144.4
2242 Female, age 91, right hemisphere 59.5
2829 Male, age 80, left hemisphere 45.8
2535 Female, age 67, right hemisphere 9.9
2429 Female, age 94, left hemisphere 3.0
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 61.1
1883 Male, age 76, both hemispheres 284.0
2534 Female, age 94, left hemisphere 44.3
2255 Female, age 91, right hemisphere 20.4
2256 Male, age 80, left hemisphere 18.3
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 17.7
2486 Female, age 94, both hemispheres 40.3
1974 Female, age 91, both hemispheres 12.9
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 91.4
Samples: 152

Max nTPM: 485.8
Min nTPM: 6.1
Std nTPM: 78.6
Median nTPM: 67.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 485.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 432.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 367.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 359.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 310.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 237.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 232.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 231.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 215.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 203.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 198.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 197.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 196.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 195.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 192.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 190.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 189.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 171.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 169.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 167.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 166.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 166.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 165.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 161.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 147.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 146.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 144.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 144.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 141.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 138.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 138.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 133.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 130.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 127.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 122.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 116.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 116.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 115.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 115.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 113.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 112.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 110.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 110.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 108.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 108.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 106.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 105.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 104.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 102.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 101.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 94.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 92.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 91.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 91.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 87.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 85.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 83.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 83.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 82.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 80.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 80.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 79.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 77.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 74.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 71.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 70.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 70.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 69.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 69.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 68.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 67.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 67.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 66.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 65.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 64.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 63.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 63.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 61.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 61.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 61.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 60.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 60.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 59.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 59.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 59.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 58.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 57.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 57.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 57.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 56.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 56.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 49.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 49.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 49.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 49.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 47.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 46.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 43.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 41.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 41.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 40.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 40.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 38.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 38.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 36.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 36.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 36.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 36.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 36.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 34.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 34.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 34.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 33.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 33.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 31.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 31.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 30.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 30.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 30.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 29.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 28.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 27.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 26.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 25.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 25.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 25.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 24.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 23.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 23.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 22.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 21.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 21.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 19.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 19.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 18.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 18.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 18.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 17.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 14.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 14.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 11.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 11.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 6.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 174.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 174.6
FF:10151-102I7 76 years, female 174.6

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