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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:487.1 nTPM
HPA:487.1 nTPM
FANTOM5:2212.8 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 487.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 133.4
1984 Male, age 76, both hemispheres 219.4
2301 Female, age 85, both hemispheres 175.5
2188 Female, age 91, both hemispheres 112.2
2090 Male, age 80, both hemispheres 26.7
Dorsal cochlear nucleus
nTPM: 110.1
2187 Female, age 91, both hemispheres 134.0
2370 Male, age 61, both hemispheres 120.3
2802 Male, age 74, right hemisphere 118.9
2378 Male, age 80, both hemispheres 104.1
2058 Male, age 76, both hemispheres 73.3
Dorsal tegmental nucleus
nTPM: 96.5
2083 Male, age 80, both hemispheres 141.0
2358 Male, age 61, both hemispheres 104.7
1936 Male, age 76, left hemisphere 102.4
2326 Male, age 74, both hemispheres 38.0
Dorsolateral tegmental area
nTPM: 39.6
2654 Male, age 80, both hemispheres 77.3
2751 Female, age 85, both hemispheres 52.0
2141 Male, age 76, both hemispheres 36.7
2360 Male, age 74, both hemispheres 32.0
2337 Male, age 61, both hemispheres 0.0
Kolliker-Fuse nucleus
nTPM: 318.0
2163 Male, age 80, both hemispheres 726.7
2793 Female, age 91, left hemisphere 206.1
2315 Male, age 76, right hemisphere 21.2
Lateral lemniscal nuclei
nTPM: 258.8
2453 Male, age 74, right hemisphere 461.2
2169 Male, age 76, both hemispheres 378.9
2320 Female, age 91, left hemisphere 245.7
2746 Female, age 85, left hemisphere 123.7
2036 Male, age 80, both hemispheres 84.7
Lateral parabrachial nucleus
nTPM: 113.0
2139 Female, age 85, right hemisphere 214.2
2790 Male, age 61, both hemispheres 139.7
2013 Male, age 80, both hemispheres 79.4
2792 Male, age 76, both hemispheres 18.7
Lateral vestibular nucleus
nTPM: 487.1
2184 Male, age 76, both hemispheres 856.9
2311 Male, age 80, both hemispheres 117.4
Locus coeruleus
nTPM: 183.7
2720 Male, age 74, both hemispheres 431.3
2123 Female, age 91, both hemispheres 245.1
2788 Male, age 74, unknown 164.5
2014 Male, age 55, unknown 135.5
2317 Female, age 72, unknown 132.5
2162 Male, age 80, both hemispheres 108.7
1980 Male, age 76, both hemispheres 68.3
Medial olivary nucleus
nTPM: 17.7
2851 Male, age 80, both hemispheres 70.9
1943 Male, age 61, both hemispheres 0.0
1962 Male, age 76, both hemispheres 0.0
2138 Female, age 91, both hemispheres 0.0
Medial parabrachial nucleus
nTPM: 141.2
2156 Male, age 61, both hemispheres 355.7
2854 Male, age 80, both hemispheres 207.0
2786 Male, age 76, both hemispheres 71.8
2170 Female, age 91, both hemispheres 54.2
2463 Female, age 85, right hemisphere 17.4
Medial periolivary nuclei
nTPM: 246.5
2171 Female, age 85, both hemispheres 492.1
2063 Male, age 76, both hemispheres 275.1
2458 Female, age 91, both hemispheres 223.1
2791 Male, age 74, right hemisphere 155.3
2081 Male, age 80, both hemispheres 87.2
Motor facial nucleus
nTPM: 267.7
2327 Male, age 80, both hemispheres 343.6
2697 Female, age 85, both hemispheres 343.2
2365 Male, age 74, right hemisphere 324.3
2062 Male, age 76, both hemispheres 276.2
2795 Female, age 91, both hemispheres 200.9
2126 Male, age 61, both hemispheres 118.0
Motor trigeminal nucleus
nTPM: 149.9
2079 Male, age 80, both hemispheres 221.5
2560 Male, age 74, both hemispheres 185.2
2321 Female, age 91, both hemispheres 157.5
2335 Male, age 61, both hemispheres 108.1
2309 Male, age 76, both hemispheres 77.4
Nuclei of the trapezoid body
nTPM: 292.1
2159 Male, age 61, both hemispheres 419.6
2735 Female, age 85, both hemispheres 273.0
1983 Male, age 76, both hemispheres 264.0
2368 Female, age 91, both hemispheres 263.9
2166 Male, age 80, both hemispheres 239.7
Paramedian reticular nucleus
nTPM: 174.1
2050 Female, age 85, both hemispheres 225.0
2313 Male, age 61, both hemispheres 210.8
2057 Male, age 80, both hemispheres 158.9
2052 Male, age 76, both hemispheres 101.5
Pontine nuclei
nTPM: 220.2
2787 Female, age 85, both hemispheres 304.0
1863 Male, age 55, unknown 290.8
2727 Male, age 61, right hemisphere 280.5
2454 Male, age 74, left hemisphere 247.9
1968 Male, age 76, left hemisphere 222.7
2109 Female, age 72, unknown 183.0
2115 Male, age 80, left hemisphere 125.6
2319 Female, age 91, both hemispheres 106.9
Pontine raphe nucleus
nTPM: 94.7
2122 Female, age 85, midline 180.6
2853 Male, age 76, midline 8.7
Posteroventral cochlear nucleus
nTPM: 113.1
2752 Female, age 85, both hemispheres 179.0
2070 Male, age 76, both hemispheres 153.6
2371 Male, age 61, both hemispheres 140.9
2341 Male, age 80, both hemispheres 92.0
2135 Female, age 91, both hemispheres 0.0
Principal sensory trigeminal nucleus
nTPM: 394.6
2324 Male, age 76, both hemispheres 683.8
2158 Male, age 61, both hemispheres 458.4
2367 Female, age 91, left hemisphere 224.5
2008 Male, age 80, left hemisphere 211.6
Reticular pontine nucleus, caudal
nTPM: 216.9
2332 Male, age 80, right hemisphere 433.9
2457 Female, age 91, both hemispheres 225.1
2092 Male, age 76, both hemispheres 168.3
2559 Male, age 74, both hemispheres 40.4
Reticular pontine nucleus, oral
nTPM: 146.3
2361 Male, age 74, both hemispheres 281.7
2366 Female, age 91, both hemispheres 188.0
2012 Female, age 85, both hemispheres 121.5
2167 Male, age 76, both hemispheres 90.9
1939 Male, age 80, both hemispheres 49.2
Reticulotegmental nucleus
nTPM: 245.3
2322 Female, age 91, both hemispheres 355.5
2333 Male, age 80, both hemispheres 230.7
2325 Male, age 76, both hemispheres 218.8
2452 Male, age 74, both hemispheres 176.0
Spinal trigeminal nucleus, oral
nTPM: 383.5
2164 Male, age 80, both hemispheres 720.6
2737 Female, age 85, both hemispheres 343.9
1978 Male, age 76, both hemispheres 86.1
Subcoeruleus area
nTPM: 105.3
2089 Male, age 76, left hemisphere 180.3
1958 Male, age 80, both hemispheres 141.6
2323 Female, age 91, left hemisphere 127.7
2451 Male, age 74, both hemispheres 54.2
2369 Female, age 85, left hemisphere 22.7
Superior olive
nTPM: 221.3
2329 Male, age 80, right hemisphere 275.4
2561 Female, age 91, both hemispheres 246.5
1875 Female, age 85, both hemispheres 230.2
2364 Male, age 74, right hemisphere 212.1
2020 Male, age 76, both hemispheres 142.3
Superior vestibular nucleus
nTPM: 81.3
2015 Male, age 80, both hemispheres 130.4
2061 Male, age 76, both hemispheres 71.0
2383 Male, age 74, both hemispheres 42.5
Ventral periolivary nuclei
nTPM: 264.1
2165 Male, age 80, both hemispheres 383.6
2794 Female, age 91, left hemisphere 287.7
2130 Female, age 85, both hemispheres 268.2
2023 Male, age 76, both hemispheres 117.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 219.0
2449 Male, age 74, both hemispheres 415.0
2840 Female, age 85, both hemispheres 331.6
2161 Male, age 80, both hemispheres 195.9
1959 Male, age 76, both hemispheres 166.8
2456 Female, age 91, both hemispheres 158.5
2359 Male, age 61, both hemispheres 46.2

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2212.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1147.2
FF:10182-103D2 60 years, female 1926.3
FF:10165-103B3 76 years, female 368.1
Pons
Scaled Tags Per Million: 2212.8
FF:10033-101E6 18-54 years, mixed 2212.8

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