BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:60.4 nTPM
HPA:60.4 nTPM
GTEx:65.3 nTPM
FANTOM5:53.7 Scaled Tags Per Million
Pig:39.0 nTPM
Mouse:64.8 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008176
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.2
1781 Male, age 74, unknown 58.9
2481 Female, age 94, left hemisphere 58.4
2289 Male, age 61, right hemisphere 54.7
2846 Female, age 79, unknown 51.9
2288 Male, age 75, left hemisphere 49.0
1854 Male, age 80, left hemisphere 48.8
2290 Female, age 72, unknown 48.3
1857 Female, age 85, left hemisphere 47.5
Claustrum
nTPM: 55.4
2198 Male, age 80, both hemispheres 60.1
1956 Male, age 74, unknown 59.7
2645 Female, age 72, unknown 58.9
2284 Female, age 91, both hemispheres 56.5
2196 Female, age 79, unknown 55.6
2292 Female, age 85, both hemispheres 55.5
2568 Male, age 61, both hemispheres 52.7
2491 Male, age 75, both hemispheres 51.7
2392 Female, age 94, both hemispheres 47.9
Globus pallidus, externus
nTPM: 60.4
2646 Male, age 61, right hemisphere 64.5
2772 Female, age 79, unknown 62.8
1996 Male, age 80, right hemisphere 62.2
2395 Male, age 75, both hemispheres 57.3
2567 Female, age 72, unknown 55.1
Globus pallidus, internus
nTPM: 57.8
2483 Female, age 94, right hemisphere 61.5
1818 Male, age 74, unknown 61.0
2287 Male, age 75, right hemisphere 60.5
2566 Female, age 72, unknown 58.7
2037 Male, age 80, right hemisphere 58.4
2778 Female, age 91, both hemispheres 54.5
2111 Female, age 85, right hemisphere 50.1
Nucleus accumbens
nTPM: 49.2
2391 Female, age 94, left hemisphere 60.0
2698 Female, age 72, unknown 50.7
1783 Male, age 74, unknown 49.8
2286 Male, age 75, left hemisphere 49.8
1856 Female, age 91, right hemisphere 49.0
1806 Female, age 85, left hemisphere 47.7
2732 Male, age 80, right hemisphere 47.2
2824 Male, age 61, right hemisphere 39.7
Nucleus basalis of Meynert
nTPM: 54.8
2569 Male, age 61, both hemispheres 62.2
2821 Male, age 75, both hemispheres 55.7
2484 Female, age 94, left hemisphere 54.6
2393 Male, age 80, right hemisphere 46.6
Nucleus of the diagonal band
nTPM: 55.6
1812 Female, age 91, both hemispheres 62.7
2775 Male, age 80, right hemisphere 59.1
2195 Female, age 85, both hemispheres 57.5
2029 Male, age 61, right hemisphere 51.5
1979 Male, age 74, unknown 47.1
Olfactory tubercle
nTPM: 55.5
1998 Female, age 91, both hemispheres 60.7
1846 Male, age 80, right hemisphere 59.4
2856 Male, age 75, right hemisphere 55.7
2487 Female, age 94, left hemisphere 46.1
Putamen
nTPM: 50.2
2482 Female, age 94, left hemisphere 55.5
2647 Male, age 75, left hemisphere 53.4
2489 Female, age 72, unknown 52.1
1829 Male, age 74, unknown 48.1
1838 Male, age 80, right hemisphere 47.9
1937 Female, age 91, right hemisphere 47.5
2466 Female, age 79, unknown 47.2
Septal nuclei
nTPM: 55.7
1960 Male, age 74, unknown 64.8
2031 Female, age 72, unknown 60.0
2009 Female, age 91, both hemispheres 55.4
2059 Female, age 85, both hemispheres 53.7
2629 Female, age 94, right hemisphere 53.4
2199 Male, age 80, right hemisphere 52.8
2394 Male, age 61, left hemisphere 50.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 65.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.9
Samples: 246

Max nTPM: 137.6
Min nTPM: 29.1
Std nTPM: 14.9
Median nTPM: 57.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 137.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 119.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 115.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 104.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 100.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 100.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 98.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 93.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 92.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 92.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 92.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 60.0
Samples: 246

Max nTPM: 170.2
Min nTPM: 28.2
Std nTPM: 17.2
Median nTPM: 59.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 170.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 143.9
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 117.0
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 115.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 114.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 112.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 104.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 95.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 93.1
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 91.9
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 89.1
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Brain - Putamen (basal ganglia)
Average nTPM: 65.3
Samples: 205

Max nTPM: 268.9
Min nTPM: 34.1
Std nTPM: 21.5
Median nTPM: 61.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 268.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 159.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 127.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 113.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 113.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 104.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 98.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 97.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 96.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 96.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 96.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.9
FF:10164-103B2 76 years, female 44.9
Globus pallidus
Scaled Tags Per Million: 45.6
FF:10175-103C4 60 years, female 46.5
FF:10161-103A8 76 years, female 44.8
Nucleus accumbens
Scaled Tags Per Million: 53.7
FF:10037-101F1 23-56 years, mixed 53.7
Putamen
Scaled Tags Per Million: 41.5
FF:10176-103C5 60 years, female 41.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.0
Pig sample Sample description nTPM
Caudate
nTPM: 30.0
Samples: 4

Max nTPM: 37.2
Min nTPM: 22.6
Sample A Female 22.6
Sample B Female 31.4
Sample C Male 37.2
Sample D Male 28.7
Putamen
nTPM: 32.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 23.7
Sample A Female 31.7
Sample B Female 23.7
Sample C Male 35.1
Sample D Male 37.3
Septum
nTPM: 39.0
Samples: 4

Max nTPM: 60.3
Min nTPM: 28.0
Sample A Female 30.7
Sample B Female 28.0
Sample C Male 60.3
Sample D Male 37.1
Ventral pallidum
nTPM: 35.3
Samples: 4

Max nTPM: 57.2
Min nTPM: 24.1
Sample A Female 24.1
Sample B Female 27.8
Sample C Male 57.2
Sample D Male 32.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 58.9
Samples: 4

Max nTPM: 65.9
Min nTPM: 46.3
Sample A Male 62.7
Sample B Male 65.9
Sample C Female 46.3
Sample D Female 60.5
Septum
nTPM: 61.7
Samples: 4

Max nTPM: 69.7
Min nTPM: 55.9
Sample A Male 69.7
Sample B Male 55.9
Sample C Female 59.2
Sample D Female 61.9
Ventral forebrain
nTPM: 64.8
Samples: 4

Max nTPM: 71.0
Min nTPM: 60.7
Sample A Male 60.7
Sample B Male 71.0
Sample C Female 63.4
Sample D Female 64.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
69782467 Antisense, RP_050505_03_A10, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.3
69782467 Antisense, RP_050505_03_A10, Mouse strain C57BL/6J (56 days, male) 1.3

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