MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA:30.9 nTPM
GTEx:33.9 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:35.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
2586 Male, age 75, left hemisphere 32.8
1827 Male, age 72, unknown 30.8
1870 Female, age 42, unknown 30.6
2666 Male, age 74, left hemisphere 30.4
2019 Male, age 18, unknown 30.3
2828 Female, age 72, unknown 30.3
1833 Male, age 53, unknown 28.9
1830 Male, age 51, unknown 28.6
2219 Male, age 76, both hemispheres 28.4
2411 Female, age 72, unknown 28.1
Dorsal raphe nucleus
nTPM: 30.4
2047 Male, age 72, unknown 31.5
2298 Female, age 72, unknown 31.1
2016 Female, age 72, unknown 30.2
1828 Male, age 53, unknown 29.7
2750 Male, age 76, both hemispheres 29.3
Inferior colliculus
nTPM: 29.5
1890 Male, age 53, unknown 29.9
2097 Female, age 72, unknown 29.9
1848 Female, age 42, unknown 29.1
2849 Male, age 72, unknown 29.0
Median raphe nucleus
nTPM: 30.8
2220 Male, age 76, midline 30.8
Pedunculopontine tegmental nucleus
nTPM: 30.3
2334 Male, age 80, both hemispheres 31.3
2338 Male, age 61, both hemispheres 30.3
1921 Female, age 85, both hemispheres 29.4
Periaquaductal grey, anterior
nTPM: 29.5
1795 Male, age 51, unknown 29.7
1947 Male, age 18, unknown 29.4
2502 Female, age 75, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 27.9
1831 Male, age 72, unknown 28.9
1840 Male, age 53, unknown 28.0
2464 Female, age 72, unknown 27.7
2850 Male, age 76, both hemispheres 27.1
Periaquaductal grey, lateral
nTPM: 29.1
2272 Male, age 74, both hemispheres 30.9
2053 Male, age 18, unknown 29.3
2140 Male, age 76, both hemispheres 27.2
Pretectal area
nTPM: 30.9
1817 Female, age 42, unknown 33.7
2007 Male, age 72, unknown 33.4
1816 Male, age 51, unknown 32.7
1815 Male, age 53, unknown 32.1
1944 Female, age 72, unknown 32.0
2273 Male, age 74, both hemispheres 31.0
2224 Female, age 72, unknown 30.1
2667 Female, age 75, unknown 29.8
2825 Male, age 18, unknown 29.1
2407 Male, age 75, both hemispheres 29.0
2316 Male, age 76, right hemisphere 27.5
Red nucleus
nTPM: 29.1
2503 Female, age 72, unknown 30.8
2725 Female, age 75, unknown 30.7
2785 Male, age 18, unknown 30.3
2584 Male, age 75, left hemisphere 30.2
1821 Female, age 72, unknown 29.1
2769 Male, age 72, unknown 29.0
1865 Male, age 51, unknown 28.7
2227 Male, age 72, unknown 28.4
1954 Female, age 42, unknown 28.3
2588 Male, age 74, left hemisphere 28.1
1904 Male, age 53, unknown 28.0
2823 Male, age 76, right hemisphere 28.0
Substantia nigra
nTPM: 29.9
2665 Male, age 74, both hemispheres 32.5
1889 Female, age 72, unknown 32.0
1941 Male, age 53, unknown 31.4
2583 Male, age 75, right hemisphere 31.0
1916 Female, age 42, unknown 30.9
1851 Male, age 51, unknown 30.0
2590 Female, age 75, unknown 28.9
2699 Male, age 18, unknown 28.7
2409 Female, age 72, unknown 27.1
2241 Male, age 72, unknown 26.6
Superior colliculus
nTPM: 29.9
1796 Male, age 53, unknown 30.8
2261 Male, age 18, unknown 30.8
2587 Male, age 74, left hemisphere 30.8
1913 Female, age 42, unknown 30.5
2668 Female, age 75, unknown 30.3
2087 Female, age 72, unknown 30.2
1995 Male, age 72, unknown 29.6
1839 Male, age 51, unknown 29.1
2664 Male, age 75, both hemispheres 28.7
1895 Male, age 76, right hemisphere 28.1
Ventral tegmental area
nTPM: 29.6
2223 Female, age 72, unknown 30.2
2410 Female, age 72, unknown 30.1
1942 Male, age 51, unknown 29.9
1915 Female, age 42, unknown 29.8
2218 Male, age 76, both hemispheres 29.2
2021 Male, age 53, unknown 28.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.9
Samples: 139

Max nTPM: 61.8
Min nTPM: 15.5
Std nTPM: 7.1
Median nTPM: 33.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 61.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 59.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 50.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 47.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 46.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 45.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 44.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 44.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 44.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 28.8
Min nTPM: 18.8
Sample A Female 28.8
Sample B Female 21.1
Sample C Male 18.8
Sample D Male 18.9
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 23.5
Min nTPM: 18.5
Sample B Female 18.5
Sample C Male 23.5
Sample D Male 21.5
Substantia nigra
nTPM: 19.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 17.5
Sample A Female 23.6
Sample B Female 18.0
Sample C Male 17.5
Sample D Male 19.3
Superior colliculi
nTPM: 23.2
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.8
Sample A Female 27.2
Sample B Female 21.8
Sample C Male 21.8
Sample D Male 21.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 39.1
Min nTPM: 32.7
Sample A Male 39.1
Sample B Male 32.7
Sample C Female 32.8
Sample D Female 36.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
73606582 Antisense, RP_051130_01_C02, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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