MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.7 nTPM
HPA:41.7 nTPM
GTEx:50.2 nTPM
FANTOM5:14.6 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:14.2 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.4
2586 Male, age 75, left hemisphere 48.8
2019 Male, age 18, unknown 44.0
1827 Male, age 72, unknown 42.8
2828 Female, age 72, unknown 42.3
2666 Male, age 74, left hemisphere 40.9
2411 Female, age 72, unknown 40.3
2219 Male, age 76, both hemispheres 38.2
1870 Female, age 42, unknown 35.9
1833 Male, age 53, unknown 35.6
1830 Male, age 51, unknown 35.5
Dorsal raphe nucleus
nTPM: 38.3
2298 Female, age 72, unknown 40.8
1828 Male, age 53, unknown 40.1
2047 Male, age 72, unknown 37.7
2750 Male, age 76, both hemispheres 37.6
2016 Female, age 72, unknown 35.3
Inferior colliculus
nTPM: 37.2
2097 Female, age 72, unknown 39.7
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 36.5
2849 Male, age 72, unknown 34.7
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Pedunculopontine tegmental nucleus
nTPM: 36.4
1921 Female, age 85, both hemispheres 37.4
2334 Male, age 80, both hemispheres 37.1
2338 Male, age 61, both hemispheres 34.8
Periaquaductal grey, anterior
nTPM: 41.7
1795 Male, age 51, unknown 43.2
2502 Female, age 75, unknown 42.3
1947 Male, age 18, unknown 39.7
Periaquaductal grey, dorsal
nTPM: 36.8
1831 Male, age 72, unknown 38.9
2464 Female, age 72, unknown 37.4
1840 Male, age 53, unknown 36.5
2850 Male, age 76, both hemispheres 34.3
Periaquaductal grey, lateral
nTPM: 35.1
2053 Male, age 18, unknown 36.0
2272 Male, age 74, both hemispheres 35.4
2140 Male, age 76, both hemispheres 34.0
Pretectal area
nTPM: 41.7
2007 Male, age 72, unknown 49.7
1816 Male, age 51, unknown 48.1
1944 Female, age 72, unknown 46.8
1817 Female, age 42, unknown 45.6
1815 Male, age 53, unknown 43.6
2667 Female, age 75, unknown 41.0
2407 Male, age 75, both hemispheres 38.3
2273 Male, age 74, both hemispheres 37.1
2825 Male, age 18, unknown 36.6
2224 Female, age 72, unknown 35.7
2316 Male, age 76, right hemisphere 35.6
Red nucleus
nTPM: 39.4
2785 Male, age 18, unknown 42.9
2584 Male, age 75, left hemisphere 41.8
2588 Male, age 74, left hemisphere 40.9
2503 Female, age 72, unknown 40.8
2725 Female, age 75, unknown 39.8
1821 Female, age 72, unknown 39.3
2769 Male, age 72, unknown 38.9
1954 Female, age 42, unknown 38.7
2227 Male, age 72, unknown 38.2
1865 Male, age 51, unknown 37.6
1904 Male, age 53, unknown 37.6
2823 Male, age 76, right hemisphere 36.8
Substantia nigra
nTPM: 40.8
1941 Male, age 53, unknown 44.3
2665 Male, age 74, both hemispheres 44.3
1916 Female, age 42, unknown 43.7
1851 Male, age 51, unknown 43.4
1889 Female, age 72, unknown 42.4
2583 Male, age 75, right hemisphere 41.4
2409 Female, age 72, unknown 37.9
2590 Female, age 75, unknown 37.8
2699 Male, age 18, unknown 37.4
2241 Male, age 72, unknown 35.8
Superior colliculus
nTPM: 40.4
2087 Female, age 72, unknown 45.3
2664 Male, age 75, both hemispheres 45.1
1796 Male, age 53, unknown 43.1
2261 Male, age 18, unknown 42.0
2668 Female, age 75, unknown 41.9
1995 Male, age 72, unknown 38.9
1913 Female, age 42, unknown 38.2
1839 Male, age 51, unknown 36.7
2587 Male, age 74, left hemisphere 36.6
1895 Male, age 76, right hemisphere 35.8
Ventral tegmental area
nTPM: 38.7
2410 Female, age 72, unknown 41.8
1915 Female, age 42, unknown 40.2
1942 Male, age 51, unknown 39.8
2218 Male, age 76, both hemispheres 38.2
2223 Female, age 72, unknown 37.1
2021 Male, age 53, unknown 35.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 91.9
Min nTPM: 21.7
Std nTPM: 12.0
Median nTPM: 49.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 91.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 88.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 81.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 76.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 75.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 73.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 73.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 67.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 67.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.6
FF:10158-103A5 76 years, female 14.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 18.5
Min nTPM: 13.9
Sample A Female 18.5
Sample B Female 16.0
Sample C Male 13.9
Sample D Male 14.1
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 16.6
Min nTPM: 12.3
Sample B Female 12.3
Sample C Male 16.6
Sample D Male 12.9
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 21.4
Min nTPM: 12.7
Sample A Female 21.4
Sample B Female 13.9
Sample C Male 15.8
Sample D Male 12.7
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.9
Sample A Female 18.7
Sample B Female 15.6
Sample C Male 14.9
Sample D Male 15.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 19.9
Min nTPM: 9.0
Sample A Male 19.9
Sample B Male 12.0
Sample C Female 9.0
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
633304 Antisense, RP_040907_02_F12, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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