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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:345.5 nTPM
HPA:345.5 nTPM
FANTOM5:199.9 Scaled Tags Per Million
Pig:319.8 nTPM
Mouse:355.1 nTPM
Allen mouse:18.2 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max nTPM 345.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 290.5
2032 Female, age 42, unknown 342.7
2497 Male, age 66, unknown 295.7
2396 Male, age 61, right hemisphere 232.9
Centromedial thalamic nucleus
nTPM: 292.7
2401 Male, age 76, right hemisphere 375.7
2279 Female, age 85, left hemisphere 209.7
Habenula
nTPM: 318.2
1957 Male, age 80, both hemispheres 343.3
2203 Male, age 61, left hemisphere 322.7
2276 Male, age 66, unknown 317.4
2252 Male, age 62, unknown 289.2
Lateral geniculate body
nTPM: 340.6
2035 Female, age 72, unknown 379.1
2399 Male, age 61, left hemisphere 378.5
1953 Male, age 62, unknown 374.6
2106 Female, age 67, right hemisphere 354.2
2857 Male, age 74, right hemisphere 348.2
2659 Male, age 66, unknown 304.4
2841 Male, age 80, both hemispheres 298.3
2575 Female, age 94, right hemisphere 287.2
Lateral thalamic nuclei
nTPM: 316.1
1903 Male, age 76, left hemisphere 341.4
2661 Female, age 72, unknown 341.2
2577 Male, age 74, both hemispheres 319.3
2765 Female, age 67, both hemispheres 290.8
2573 Female, age 94, left hemisphere 287.7
Medial dorsal thalamic nucleus
nTPM: 321.2
2283 Male, age 80, right hemisphere 353.8
1859 Male, age 76, both hemispheres 351.1
2572 Female, age 94, right hemisphere 337.7
2498 Male, age 66, unknown 333.7
2026 Male, age 62, unknown 333.2
1810 Male, age 48, unknown 333.0
2576 Male, age 74, both hemispheres 323.1
2492 Male, age 75, right hemisphere 317.6
1971 Male, age 61, right hemisphere 310.7
1930 Female, age 42, unknown 307.5
2660 Female, age 72, unknown 305.2
2039 Female, age 72, unknown 285.3
2402 Female, age 67, both hemispheres 283.6
Medial geniculate body
nTPM: 306.8
1811 Female, age 42, unknown 333.5
2571 Male, age 75, right hemisphere 324.6
2657 Male, age 74, right hemisphere 318.6
2207 Male, age 80, right hemisphere 310.6
2650 Female, age 94, left hemisphere 308.6
2049 Male, age 76, both hemispheres 288.5
2217 Female, age 72, unknown 263.4
Nucleus reuniens
nTPM: 257.3
2212 Female, age 67, left hemisphere 273.3
2205 Male, age 80, left hemisphere 261.6
2210 Female, age 85, left hemisphere 236.9
Nucleus rhomboideus
nTPM: 272.4
2206 Male, age 80, both hemispheres 328.9
2280 Female, age 85, left hemisphere 249.8
2213 Female, age 67, left hemisphere 238.5
Posterior thalamic nucleus
nTPM: 320.5
2655 Male, age 74, right hemisphere 337.4
2649 Female, age 94, both hemispheres 336.1
2266 Male, age 76, right hemisphere 318.0
2495 Female, age 67, right hemisphere 290.5
Pulvinar
nTPM: 341.1
1972 Male, age 62, unknown 384.2
1932 Male, age 80, right hemisphere 377.3
2398 Male, age 61, left hemisphere 371.7
1929 Male, age 48, unknown 346.0
1899 Female, age 42, unknown 344.1
2724 Male, age 74, right hemisphere 344.0
2582 Female, age 72, unknown 338.0
2499 Male, age 66, unknown 305.9
2214 Male, age 76, right hemisphere 300.2
2496 Female, age 67, right hemisphere 299.1
Subthalamic nucleus
nTPM: 273.3
2658 Male, age 74, both hemispheres 324.2
2282 Male, age 61, both hemispheres 292.8
2406 Female, age 72, unknown 278.9
2275 Male, age 66, unknown 276.6
2124 Male, age 62, unknown 270.1
2779 Female, age 42, unknown 267.0
2056 Female, age 72, unknown 240.9
2216 Male, age 48, unknown 235.6
Ventral posterolateral thalamic nucleus
nTPM: 345.5
2740 Male, age 76, right hemisphere 410.9
2581 Female, age 72, unknown 346.0
2197 Male, age 80, both hemispheres 332.7
2578 Male, age 74, both hemispheres 332.5
2397 Male, age 61, right hemisphere 327.2
2570 Male, age 75, right hemisphere 323.7
Ventral posteromedial thalamic nucleus
nTPM: 319.9
2758 Male, age 80, both hemispheres 365.1
2653 Male, age 74, both hemispheres 335.7
2202 Male, age 61, left hemisphere 322.6
2281 Male, age 75, right hemisphere 318.0
2127 Male, age 76, right hemisphere 258.2
Ventral thalamic nuclei
nTPM: 324.2
1845 Male, age 48, unknown 368.7
2858 Female, age 72, unknown 368.6
1860 Male, age 76, both hemispheres 351.0
2285 Male, age 62, unknown 330.9
1912 Female, age 42, unknown 324.4
2580 Male, age 66, unknown 318.5
2652 Male, age 74, left hemisphere 294.2
2204 Male, age 80, both hemispheres 282.6
2291 Female, age 72, unknown 279.2
Ventromedial nucleus
nTPM: 282.1
1982 Female, age 72, unknown 298.6
1822 Female, age 42, unknown 265.6
Zona incerta
nTPM: 273.5
2822 Male, age 74, right hemisphere 296.7
2663 Female, age 72, unknown 289.0
2208 Male, age 80, right hemisphere 274.5
2215 Male, age 66, unknown 267.5
2403 Male, age 62, unknown 239.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 199.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 199.9
FF:10154-103A1 76 years, female 199.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 319.8
Pig sample Sample description nTPM
Thalamus
nTPM: 319.8
Samples: 4

Max nTPM: 455.2
Min nTPM: 168.4
Sample A Female 455.2
Sample B Female 267.6
Sample C Male 387.8
Sample D Male 168.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 355.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 355.1
Samples: 4

Max nTPM: 393.6
Min nTPM: 332.7
Sample A Male 393.6
Sample B Male 333.3
Sample C Female 360.9
Sample D Female 332.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 18.2
69524404 Antisense, RP_050419_04_C07, Mouse strain C57BL/6J (56 days, male) 18.2

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