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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:325.2 nTPM
HPA:325.2 nTPM
GTEx:525.2 nTPM
FANTOM5:343.2 Scaled Tags Per Million
Pig:225.7 nTPM
Mouse:465.0 nTPM
Allen mouse:17.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 325.2
Sample id Sample description nTPM
Amygdala
nTPM: 300.3
2814 Male, age 76, right hemisphere 347.2
2695 Female, age 67, right hemisphere 299.3
2517 Female, age 94, left hemisphere 294.6
1987 Female, age 91, left hemisphere 287.2
2514 Male, age 75, right hemisphere 273.1
Basal amygdala
nTPM: 325.2
2827 Female, age 67, right hemisphere 343.1
2609 Male, age 75, right hemisphere 340.5
2685 Female, age 94, left hemisphere 334.3
1955 Male, age 76, both hemispheres 326.3
2243 Female, age 91, right hemisphere 307.4
2110 Male, age 80, left hemisphere 299.4
Central amygdala
nTPM: 320.9
2826 Female, age 94, left hemisphere 403.1
1905 Male, age 76, both hemispheres 347.0
2239 Male, age 80, left hemisphere 296.2
2515 Male, age 75, right hemisphere 280.8
2701 Female, age 91, right hemisphere 277.2
Corticomedial amygdala
nTPM: 297.0
2829 Male, age 80, left hemisphere 335.4
2535 Female, age 67, right hemisphere 311.6
2428 Male, age 75, right hemisphere 299.1
2429 Female, age 94, left hemisphere 289.7
2242 Female, age 91, right hemisphere 275.4
2240 Male, age 76, both hemispheres 270.9
Lateral amygdala
nTPM: 321.2
2534 Female, age 94, left hemisphere 382.1
1883 Male, age 76, both hemispheres 350.4
2256 Male, age 80, left hemisphere 319.1
2516 Male, age 75, right hemisphere 298.8
2830 Female, age 67, right hemisphere 298.6
2255 Female, age 91, right hemisphere 278.0
Stria terminalis, bed nucleus
nTPM: 290.2
1974 Female, age 91, both hemispheres 324.7
2486 Female, age 94, both hemispheres 288.2
2201 Male, age 74, unknown 257.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 525.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 525.2
Samples: 152

Max nTPM: 1621.8
Min nTPM: 138.6
Std nTPM: 202.4
Median nTPM: 496.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1621.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1175.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1169.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 989.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 941.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 878.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 871.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 846.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 816.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 815.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 807.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 804.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 803.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 788.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 775.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 770.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 765.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 764.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 742.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 735.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 728.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 720.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 718.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 707.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 706.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 701.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 699.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 694.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 688.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 684.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 679.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 678.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 676.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 672.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 648.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 639.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 639.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 629.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 621.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 618.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 616.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 614.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 591.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 586.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 583.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 583.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 577.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 575.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 572.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 569.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 564.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 564.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 563.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 558.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 554.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 544.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 543.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 540.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 540.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 536.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 532.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 532.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 531.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 529.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 520.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 516.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 516.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 514.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 512.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 509.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 501.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 501.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 499.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 497.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 497.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 496.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 496.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 493.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 492.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 490.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 489.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 483.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 482.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 478.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 476.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 475.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 470.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 466.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 466.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 464.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 464.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 457.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 452.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 450.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 449.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 448.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 440.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 438.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 436.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 428.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 427.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 427.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 427.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 418.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 408.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 405.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 405.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 403.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 403.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 401.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 397.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 393.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 388.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 387.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 387.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 386.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 385.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 384.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 382.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 376.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 376.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 375.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 367.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 367.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 363.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 338.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 338.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 333.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 333.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 332.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 332.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 330.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 326.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 314.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 306.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 305.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 303.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 302.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 299.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 293.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 290.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 288.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 283.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 271.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 270.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 266.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 245.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 245.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 244.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 242.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 191.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 138.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 343.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 343.2
FF:10151-102I7 76 years, female 343.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 225.7
Pig sample Sample description nTPM
Amygdala
nTPM: 225.7
Samples: 4

Max nTPM: 329.7
Min nTPM: 180.8
Sample A Female 329.7
Sample B Female 180.8
Sample C Male 209.1
Sample D Male 183.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 465.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 465.0
Samples: 4

Max nTPM: 536.3
Min nTPM: 428.4
Sample A Male 461.7
Sample B Male 433.5
Sample C Female 536.3
Sample D Female 428.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.8
69524404 Antisense, RP_050419_04_C07, Mouse strain C57BL/6J (56 days, male) 17.8

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