MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:301.7 nTPM
HPA:301.7 nTPM
GTEx:350.8 nTPM
FANTOM5:175.2 Scaled Tags Per Million
Pig:303.4 nTPM
Mouse:295.5 nTPM
Allen mouse:16.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 301.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 286.0
2019 Male, age 18, unknown 335.9
2586 Male, age 75, left hemisphere 335.1
2828 Female, age 72, unknown 306.9
2666 Male, age 74, left hemisphere 299.6
1827 Male, age 72, unknown 285.6
2219 Male, age 76, both hemispheres 282.5
1870 Female, age 42, unknown 267.1
2411 Female, age 72, unknown 250.6
1830 Male, age 51, unknown 250.5
1833 Male, age 53, unknown 246.6
Dorsal raphe nucleus
nTPM: 269.3
1828 Male, age 53, unknown 276.7
2750 Male, age 76, both hemispheres 275.1
2047 Male, age 72, unknown 274.4
2298 Female, age 72, unknown 262.9
2016 Female, age 72, unknown 257.5
Inferior colliculus
nTPM: 282.7
2097 Female, age 72, unknown 314.7
1890 Male, age 53, unknown 298.7
1848 Female, age 42, unknown 259.8
2849 Male, age 72, unknown 257.7
Median raphe nucleus
nTPM: 276.6
2220 Male, age 76, midline 276.6
Pedunculopontine tegmental nucleus
nTPM: 270.0
1921 Female, age 85, both hemispheres 298.9
2334 Male, age 80, both hemispheres 263.6
2338 Male, age 61, both hemispheres 247.6
Periaquaductal grey, anterior
nTPM: 274.2
1795 Male, age 51, unknown 283.3
2502 Female, age 75, unknown 279.1
1947 Male, age 18, unknown 260.1
Periaquaductal grey, dorsal
nTPM: 247.4
2850 Male, age 76, both hemispheres 256.5
1831 Male, age 72, unknown 249.7
1840 Male, age 53, unknown 243.2
2464 Female, age 72, unknown 240.5
Periaquaductal grey, lateral
nTPM: 245.2
2053 Male, age 18, unknown 250.2
2140 Male, age 76, both hemispheres 247.3
2272 Male, age 74, both hemispheres 238.1
Pretectal area
nTPM: 301.7
2007 Male, age 72, unknown 383.4
1817 Female, age 42, unknown 363.4
1816 Male, age 51, unknown 359.5
1944 Female, age 72, unknown 354.5
1815 Male, age 53, unknown 328.0
2667 Female, age 75, unknown 283.4
2316 Male, age 76, right hemisphere 261.0
2224 Female, age 72, unknown 254.1
2407 Male, age 75, both hemispheres 249.9
2825 Male, age 18, unknown 245.1
2273 Male, age 74, both hemispheres 236.4
Red nucleus
nTPM: 277.4
2785 Male, age 18, unknown 333.3
2588 Male, age 74, left hemisphere 298.6
2584 Male, age 75, left hemisphere 288.6
1821 Female, age 72, unknown 280.8
2503 Female, age 72, unknown 278.6
2725 Female, age 75, unknown 274.4
2769 Male, age 72, unknown 271.0
2227 Male, age 72, unknown 266.9
1954 Female, age 42, unknown 265.4
1904 Male, age 53, unknown 259.7
1865 Male, age 51, unknown 256.2
2823 Male, age 76, right hemisphere 255.5
Substantia nigra
nTPM: 298.6
1889 Female, age 72, unknown 345.2
2665 Male, age 74, both hemispheres 336.0
1941 Male, age 53, unknown 327.7
1916 Female, age 42, unknown 327.1
1851 Male, age 51, unknown 297.0
2241 Male, age 72, unknown 278.5
2583 Male, age 75, right hemisphere 278.5
2590 Female, age 75, unknown 269.7
2409 Female, age 72, unknown 266.9
2699 Male, age 18, unknown 259.1
Superior colliculus
nTPM: 278.5
2668 Female, age 75, unknown 308.9
2087 Female, age 72, unknown 291.4
2664 Male, age 75, both hemispheres 287.3
1895 Male, age 76, right hemisphere 286.4
2261 Male, age 18, unknown 283.2
1796 Male, age 53, unknown 276.8
1913 Female, age 42, unknown 270.5
2587 Male, age 74, left hemisphere 261.5
1839 Male, age 51, unknown 260.4
1995 Male, age 72, unknown 259.0
Ventral tegmental area
nTPM: 276.4
1915 Female, age 42, unknown 296.3
1942 Male, age 51, unknown 291.8
2218 Male, age 76, both hemispheres 278.7
2410 Female, age 72, unknown 273.0
2021 Male, age 53, unknown 262.2
2223 Female, age 72, unknown 256.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 350.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 350.8
Samples: 139

Max nTPM: 942.9
Min nTPM: 156.2
Std nTPM: 110.6
Median nTPM: 333.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 942.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 645.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 623.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 579.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 574.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 548.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 545.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 520.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 516.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 510.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 508.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.2
FF:10158-103A5 76 years, female 175.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 303.4
Pig sample Sample description nTPM
Midbrain
nTPM: 259.2
Samples: 4

Max nTPM: 389.1
Min nTPM: 155.0
Sample A Female 155.0
Sample B Female 190.0
Sample C Male 389.1
Sample D Male 302.7
Periaqueductal gray
nTPM: 158.5
Samples: 3

Max nTPM: 179.8
Min nTPM: 140.6
Sample B Female 155.2
Sample C Male 179.8
Sample D Male 140.6
Substantia nigra
nTPM: 196.6
Samples: 4

Max nTPM: 265.7
Min nTPM: 131.5
Sample A Female 265.7
Sample B Female 163.8
Sample C Male 225.2
Sample D Male 131.5
Superior colliculi
nTPM: 303.4
Samples: 4

Max nTPM: 356.1
Min nTPM: 219.2
Sample A Female 356.1
Sample B Female 219.2
Sample C Male 346.6
Sample D Male 291.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 295.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 295.5
Samples: 4

Max nTPM: 345.5
Min nTPM: 260.0
Sample A Male 345.5
Sample B Male 285.3
Sample C Female 260.0
Sample D Female 291.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.0
69524404 Antisense, RP_050419_04_C07, Mouse strain C57BL/6J (56 days, male) 16.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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