MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA:15.2 nTPM
GTEx:15.7 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:25.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
2586 Male, age 75, left hemisphere 16.6
2666 Male, age 74, left hemisphere 15.6
2219 Male, age 76, both hemispheres 15.4
2828 Female, age 72, unknown 14.9
2411 Female, age 72, unknown 14.8
1827 Male, age 72, unknown 14.3
1833 Male, age 53, unknown 14.1
2019 Male, age 18, unknown 14.0
1870 Female, age 42, unknown 13.9
1830 Male, age 51, unknown 13.5
Dorsal raphe nucleus
nTPM: 14.4
2298 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 14.9
2750 Male, age 76, both hemispheres 14.9
1828 Male, age 53, unknown 13.7
2016 Female, age 72, unknown 13.2
Inferior colliculus
nTPM: 13.5
2097 Female, age 72, unknown 14.0
2849 Male, age 72, unknown 13.6
1890 Male, age 53, unknown 13.5
1848 Female, age 42, unknown 12.9
Median raphe nucleus
nTPM: 15.2
2220 Male, age 76, midline 15.2
Pedunculopontine tegmental nucleus
nTPM: 13.8
2334 Male, age 80, both hemispheres 14.3
1921 Female, age 85, both hemispheres 14.0
2338 Male, age 61, both hemispheres 13.1
Periaquaductal grey, anterior
nTPM: 14.8
2502 Female, age 75, unknown 15.5
1795 Male, age 51, unknown 15.1
1947 Male, age 18, unknown 13.8
Periaquaductal grey, dorsal
nTPM: 13.2
1840 Male, age 53, unknown 13.6
1831 Male, age 72, unknown 13.1
2464 Female, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 13.0
Periaquaductal grey, lateral
nTPM: 12.7
2053 Male, age 18, unknown 12.7
2140 Male, age 76, both hemispheres 12.6
2272 Male, age 74, both hemispheres 12.6
Pretectal area
nTPM: 14.3
1817 Female, age 42, unknown 15.5
1944 Female, age 72, unknown 15.4
2007 Male, age 72, unknown 15.3
2667 Female, age 75, unknown 14.9
1816 Male, age 51, unknown 14.8
1815 Male, age 53, unknown 14.4
2407 Male, age 75, both hemispheres 14.0
2825 Male, age 18, unknown 13.5
2224 Female, age 72, unknown 13.4
2316 Male, age 76, right hemisphere 13.0
2273 Male, age 74, both hemispheres 12.8
Red nucleus
nTPM: 13.9
2584 Male, age 75, left hemisphere 15.8
2785 Male, age 18, unknown 15.4
1904 Male, age 53, unknown 14.2
2227 Male, age 72, unknown 14.2
1865 Male, age 51, unknown 14.1
2769 Male, age 72, unknown 14.1
2588 Male, age 74, left hemisphere 13.7
1821 Female, age 72, unknown 13.5
1954 Female, age 42, unknown 13.1
2725 Female, age 75, unknown 13.0
2823 Male, age 76, right hemisphere 12.9
2503 Female, age 72, unknown 12.7
Substantia nigra
nTPM: 15.2
1916 Female, age 42, unknown 19.0
1851 Male, age 51, unknown 17.0
2583 Male, age 75, right hemisphere 15.7
2699 Male, age 18, unknown 15.3
1941 Male, age 53, unknown 14.8
2665 Male, age 74, both hemispheres 14.6
1889 Female, age 72, unknown 14.3
2590 Female, age 75, unknown 14.2
2409 Female, age 72, unknown 13.9
2241 Male, age 72, unknown 13.5
Superior colliculus
nTPM: 14.2
1796 Male, age 53, unknown 15.3
2087 Female, age 72, unknown 14.8
2261 Male, age 18, unknown 14.7
2668 Female, age 75, unknown 14.7
2664 Male, age 75, both hemispheres 14.5
1913 Female, age 42, unknown 14.0
1995 Male, age 72, unknown 14.0
1839 Male, age 51, unknown 13.7
2587 Male, age 74, left hemisphere 13.4
1895 Male, age 76, right hemisphere 13.0
Ventral tegmental area
nTPM: 14.9
2218 Male, age 76, both hemispheres 15.8
1915 Female, age 42, unknown 15.6
2410 Female, age 72, unknown 15.4
2223 Female, age 72, unknown 14.5
2021 Male, age 53, unknown 14.3
1942 Male, age 51, unknown 13.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 28.7
Min nTPM: 9.6
Std nTPM: 3.2
Median nTPM: 15.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 28.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 22.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 22.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 21.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 21.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 21.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 20.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.1
Pig sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 10.2
Min nTPM: 5.8
Sample A Female 10.2
Sample B Female 5.8
Sample C Male 6.3
Sample D Male 6.1
Periaqueductal gray
nTPM: 5.2
Samples: 3

Max nTPM: 5.7
Min nTPM: 5.0
Sample B Female 5.0
Sample C Male 5.7
Sample D Male 5.0
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.6
Sample A Female 8.4
Sample B Female 5.8
Sample C Male 6.9
Sample D Male 5.6
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.6
Sample A Female 7.8
Sample B Female 5.6
Sample C Male 7.1
Sample D Male 6.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 24.7
Sample A Male 27.7
Sample B Male 25.5
Sample C Female 24.7
Sample D Female 24.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
80526202 Antisense, RP_071204_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0
79568055 Antisense, RP_071204_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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