MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.3 nTPM
HPA:25.3 nTPM
GTEx:23.6 nTPM
FANTOM5:20.0 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:24.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2019 Male, age 18, unknown 27.5
2586 Male, age 75, left hemisphere 26.7
2411 Female, age 72, unknown 25.9
2828 Female, age 72, unknown 24.9
1827 Male, age 72, unknown 23.3
1830 Male, age 51, unknown 23.1
1870 Female, age 42, unknown 23.1
1833 Male, age 53, unknown 22.0
2666 Male, age 74, left hemisphere 21.7
2219 Male, age 76, both hemispheres 20.2
Dorsal raphe nucleus
nTPM: 23.2
2298 Female, age 72, unknown 26.1
2750 Male, age 76, both hemispheres 24.0
1828 Male, age 53, unknown 22.8
2016 Female, age 72, unknown 22.4
2047 Male, age 72, unknown 20.8
Inferior colliculus
nTPM: 21.5
2097 Female, age 72, unknown 24.4
1890 Male, age 53, unknown 23.0
1848 Female, age 42, unknown 20.8
2849 Male, age 72, unknown 18.0
Median raphe nucleus
nTPM: 21.2
2220 Male, age 76, midline 21.2
Pedunculopontine tegmental nucleus
nTPM: 22.0
1921 Female, age 85, both hemispheres 24.2
2334 Male, age 80, both hemispheres 23.0
2338 Male, age 61, both hemispheres 18.6
Periaquaductal grey, anterior
nTPM: 22.2
2502 Female, age 75, unknown 23.4
1795 Male, age 51, unknown 22.4
1947 Male, age 18, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 18.9
1831 Male, age 72, unknown 21.2
2464 Female, age 72, unknown 20.3
1840 Male, age 53, unknown 17.5
2850 Male, age 76, both hemispheres 16.5
Periaquaductal grey, lateral
nTPM: 20.9
2272 Male, age 74, both hemispheres 23.1
2053 Male, age 18, unknown 21.2
2140 Male, age 76, both hemispheres 18.5
Pretectal area
nTPM: 23.2
2007 Male, age 72, unknown 24.6
1817 Female, age 42, unknown 24.4
2273 Male, age 74, both hemispheres 24.2
1815 Male, age 53, unknown 23.9
2667 Female, age 75, unknown 23.6
2316 Male, age 76, right hemisphere 23.1
1816 Male, age 51, unknown 22.9
1944 Female, age 72, unknown 22.7
2224 Female, age 72, unknown 22.1
2825 Male, age 18, unknown 21.9
2407 Male, age 75, both hemispheres 21.4
Red nucleus
nTPM: 25.3
2503 Female, age 72, unknown 28.0
1904 Male, age 53, unknown 27.8
2769 Male, age 72, unknown 26.6
2227 Male, age 72, unknown 25.9
2588 Male, age 74, left hemisphere 25.8
1821 Female, age 72, unknown 25.7
2785 Male, age 18, unknown 25.5
1954 Female, age 42, unknown 24.8
1865 Male, age 51, unknown 24.7
2823 Male, age 76, right hemisphere 24.0
2725 Female, age 75, unknown 22.5
2584 Male, age 75, left hemisphere 22.0
Substantia nigra
nTPM: 21.2
1889 Female, age 72, unknown 23.6
2583 Male, age 75, right hemisphere 23.1
1851 Male, age 51, unknown 23.0
1916 Female, age 42, unknown 22.1
2590 Female, age 75, unknown 21.3
2699 Male, age 18, unknown 20.4
2241 Male, age 72, unknown 20.3
1941 Male, age 53, unknown 20.0
2665 Male, age 74, both hemispheres 19.5
2409 Female, age 72, unknown 19.1
Superior colliculus
nTPM: 22.6
1913 Female, age 42, unknown 25.7
1995 Male, age 72, unknown 24.4
1796 Male, age 53, unknown 23.6
2668 Female, age 75, unknown 23.2
2261 Male, age 18, unknown 22.3
2087 Female, age 72, unknown 21.9
2587 Male, age 74, left hemisphere 21.7
1895 Male, age 76, right hemisphere 21.3
1839 Male, age 51, unknown 21.1
2664 Male, age 75, both hemispheres 21.0
Ventral tegmental area
nTPM: 21.8
2410 Female, age 72, unknown 23.1
1942 Male, age 51, unknown 22.4
2223 Female, age 72, unknown 22.4
1915 Female, age 42, unknown 21.5
2021 Male, age 53, unknown 21.4
2218 Male, age 76, both hemispheres 20.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 52.0
Min nTPM: 14.5
Std nTPM: 5.2
Median nTPM: 22.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 52.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 35.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 35.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 32.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 32.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 32.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 32.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 31.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.0
FF:10158-103A5 76 years, female 20.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.6
Sample A Female 18.3
Sample B Female 12.4
Sample C Male 13.1
Sample D Male 11.6
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 15.3
Min nTPM: 12.2
Sample B Female 14.2
Sample C Male 15.3
Sample D Male 12.2
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 15.5
Min nTPM: 14.0
Sample A Female 15.5
Sample B Female 14.2
Sample C Male 15.2
Sample D Male 14.0
Superior colliculi
nTPM: 14.8
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.0
Sample A Female 14.5
Sample B Female 18.6
Sample C Male 13.2
Sample D Male 13.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 29.0
Min nTPM: 22.2
Sample A Male 29.0
Sample B Male 24.2
Sample C Female 22.2
Sample D Female 23.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68844229 Antisense, RP_050222_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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