MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA:32.3 nTPM
GTEx:20.4 nTPM
FANTOM5:78.6 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:18.9 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.9
1830 Male, age 51, unknown 33.5
1833 Male, age 53, unknown 32.8
2666 Male, age 74, left hemisphere 31.9
1870 Female, age 42, unknown 31.4
2219 Male, age 76, both hemispheres 28.5
2411 Female, age 72, unknown 27.7
2019 Male, age 18, unknown 24.7
1827 Male, age 72, unknown 24.5
2828 Female, age 72, unknown 23.3
2586 Male, age 75, left hemisphere 21.0
Dorsal raphe nucleus
nTPM: 24.9
2750 Male, age 76, both hemispheres 28.5
2016 Female, age 72, unknown 28.1
2047 Male, age 72, unknown 24.9
1828 Male, age 53, unknown 24.0
2298 Female, age 72, unknown 19.0
Inferior colliculus
nTPM: 28.6
2849 Male, age 72, unknown 30.3
2097 Female, age 72, unknown 30.1
1890 Male, age 53, unknown 28.5
1848 Female, age 42, unknown 25.6
Median raphe nucleus
nTPM: 26.4
2220 Male, age 76, midline 26.4
Pedunculopontine tegmental nucleus
nTPM: 29.0
1921 Female, age 85, both hemispheres 31.3
2334 Male, age 80, both hemispheres 29.1
2338 Male, age 61, both hemispheres 26.5
Periaquaductal grey, anterior
nTPM: 23.2
2502 Female, age 75, unknown 26.8
1947 Male, age 18, unknown 24.8
1795 Male, age 51, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 27.5
1831 Male, age 72, unknown 30.4
2464 Female, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 27.1
1840 Male, age 53, unknown 24.1
Periaquaductal grey, lateral
nTPM: 21.8
2053 Male, age 18, unknown 24.2
2140 Male, age 76, both hemispheres 21.2
2272 Male, age 74, both hemispheres 19.9
Pretectal area
nTPM: 24.3
2316 Male, age 76, right hemisphere 28.9
1815 Male, age 53, unknown 28.8
2825 Male, age 18, unknown 28.7
2407 Male, age 75, both hemispheres 25.4
2224 Female, age 72, unknown 24.4
1816 Male, age 51, unknown 22.9
1817 Female, age 42, unknown 22.9
1944 Female, age 72, unknown 22.4
2007 Male, age 72, unknown 21.8
2667 Female, age 75, unknown 20.9
2273 Male, age 74, both hemispheres 20.7
Red nucleus
nTPM: 32.3
2503 Female, age 72, unknown 38.6
2823 Male, age 76, right hemisphere 38.4
1904 Male, age 53, unknown 35.8
2725 Female, age 75, unknown 35.3
1954 Female, age 42, unknown 33.8
1865 Male, age 51, unknown 32.9
1821 Female, age 72, unknown 32.7
2588 Male, age 74, left hemisphere 31.0
2227 Male, age 72, unknown 30.3
2584 Male, age 75, left hemisphere 27.0
2785 Male, age 18, unknown 26.3
2769 Male, age 72, unknown 24.9
Substantia nigra
nTPM: 25.9
2241 Male, age 72, unknown 31.6
2699 Male, age 18, unknown 30.0
2583 Male, age 75, right hemisphere 28.9
1889 Female, age 72, unknown 27.5
2665 Male, age 74, both hemispheres 26.2
1851 Male, age 51, unknown 24.4
1941 Male, age 53, unknown 24.3
2409 Female, age 72, unknown 23.2
2590 Female, age 75, unknown 22.3
1916 Female, age 42, unknown 20.2
Superior colliculus
nTPM: 27.5
1895 Male, age 76, right hemisphere 32.6
2587 Male, age 74, left hemisphere 31.9
1995 Male, age 72, unknown 31.5
1839 Male, age 51, unknown 30.1
1913 Female, age 42, unknown 29.4
2668 Female, age 75, unknown 28.0
2087 Female, age 72, unknown 24.4
2664 Male, age 75, both hemispheres 23.7
2261 Male, age 18, unknown 22.3
1796 Male, age 53, unknown 21.4
Ventral tegmental area
nTPM: 26.2
2218 Male, age 76, both hemispheres 28.1
2223 Female, age 72, unknown 28.1
1942 Male, age 51, unknown 26.4
2410 Female, age 72, unknown 26.2
2021 Male, age 53, unknown 25.8
1915 Female, age 42, unknown 22.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 45.0
Min nTPM: 7.0
Std nTPM: 7.0
Median nTPM: 19.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 45.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 37.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 36.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 35.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 34.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 34.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 32.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 32.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 32.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 32.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.6
FF:10158-103A5 76 years, female 78.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 22.9
Min nTPM: 17.8
Sample A Female 22.9
Sample B Female 19.6
Sample C Male 18.0
Sample D Male 17.8
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 18.3
Min nTPM: 16.9
Sample B Female 18.3
Sample C Male 16.9
Sample D Male 17.9
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 18.8
Min nTPM: 18.2
Sample A Female 18.8
Sample B Female 18.6
Sample C Male 18.2
Sample D Male 18.3
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 17.1
Sample A Female 17.2
Sample B Female 17.7
Sample C Male 17.1
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 20.8
Min nTPM: 17.1
Sample A Male 17.1
Sample B Male 20.8
Sample C Female 19.7
Sample D Female 18.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70429178 Antisense, RP_050614_01_B08, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.