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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:156.1 nTPM
GTEx:156.1 nTPM
FANTOM5:352.2 Scaled Tags Per Million
Pig:72.9 nTPM
Mouse:674.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 156.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 156.1
Samples: 105

Max nTPM: 488.2
Min nTPM: 44.1
Std nTPM: 75.8
Median nTPM:
218_1 71 years, female 488.2
386_1 76 years, male 377.3
379_1 60 years, male 339.6
322_1 76 years, male 328.7
6_1 73 years, female 300.9
321_1 62 years, female 292.9
375_1 74 years, female 291.3
173_1 67 years, male 287.3
317_1 60 years, male 280.1
295_1 61 years, female 259.7
316_1 62 years, male 258.2
307_1 66 years, female 252.0
351_1 91 years, male 237.8
447_1 81 years, male 230.3
347_1 72 years, male 227.1
318_1 68 years, male 223.6
377_1 82 years, female 221.9
2_1 77 years, female 210.4
319_1 81 years, male 210.2
145_1 84 years, male 209.3
506_1 65 years, male 204.6
350_1 84 years, female 202.0
348_1 84 years, male 201.1
163_1 78 years, male 199.9
452_1 88 years, female 199.5
384_1 83 years, male 196.9
291_1 76 years, male 195.1
243_1 75 years, male 191.1
353_1 82 years, female 190.5
320_1 89 years, female 182.6
177_1 74 years, male 182.4
17_1 71 years, male 180.4
425_1 59 years, female 177.8
120_1 70 years, female 177.0
41_1 94 years, female 175.2
354_1 81 years, female 175.2
349_1 83 years, male 168.9
293_1 68 years, female 168.4
376_1 75 years, female 168.3
311_1 78 years, male 164.6
4_1 88 years, female 160.8
237_1 82 years, male 156.5
335_1 73 years, female 156.1
352_1 62 years, male 156.1
518_1 75 years, female 155.1
35_1 74 years, female 154.7
172_1 72 years, female 146.9
288_1 66 years, female 146.3
139_1 64 years, female 146.2
355_1 70 years, female 138.4
405_1 91 years, male 137.7
324_1 76 years, male 136.7
389_1 86 years, female 136.5
292_1 71 years, male 135.3
356_1 87 years, female 134.7
246_1 77 years, male 133.2
314_1 67 years, male 131.9
254_1 77 years, female 131.3
406_1 79 years, male 131.0
404_1 82 years, female 130.0
480_1 63 years, male 129.2
308_1 70 years, female 128.2
526_1 61 years, male 127.0
18_1 88 years, male 126.2
264_1 73 years, female 126.1
495_1 57 years, female 126.0
115_1 83 years, male 124.8
153_1 70 years, female 124.1
286_1 68 years, female 123.8
42_1 85 years, male 122.5
99_1 64 years, male 122.2
503_1 68 years, male 121.5
517_1 88 years, male 120.1
117_1 61 years, male 119.0
468_1 89 years, male 118.5
189_1 76 years, male 117.9
126_1 63 years, male 117.5
137_1 83 years, male 116.6
265_1 87 years, male 115.7
229_1 69 years, female 112.8
251_1 78 years, male 109.1
394_1 75 years, female 106.4
315_1 62 years, female 105.2
396_1 62 years, male 100.2
313_1 79 years, female 99.2
43_1 64 years, female 98.1
266_1 85 years, male 90.7
501_1 88 years, male 82.6
9_1 66 years, female 81.4
490_1 67 years, female 80.3
142_1 61 years, female 79.3
119_1 70 years, female 78.8
499_1 55 years, female 77.6
491_1 89 years, female 70.8
81_1 67 years, male 70.6
217_1 76 years, male 67.2
109_1 81 years, female 66.3
32_1 67 years, male 59.5
89_1 63 years, male 54.0
415_1 77 years, female 51.7
466_1 57 years, female 51.1
162_1 79 years, female 50.0
414_1 84 years, female 48.1
413_1 59 years, female 47.1
149_1 88 years, male 44.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 352.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 352.2
FF:10030-101E3 24-65 years, mixed 352.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.9
Pig sample Sample description nTPM
Retina
nTPM: 72.9
Samples: 4

Max nTPM: 77.6
Min nTPM: 66.8
Sample A Female 73.2
Sample B Female 74.0
Sample C Male 77.6
Sample D Male 66.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 674.4
Mouse sample Sample description nTPM
Retina
nTPM: 674.4
Samples: 4

Max nTPM: 733.7
Min nTPM: 575.6
Sample A Male 733.7
Sample B Male 686.0
Sample C Female 575.6
Sample D Female 702.3

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by the Knut & Alice Wallenberg Foundation.