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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:356.8 nTPM
HPA:356.8 nTPM
GTEx:487.5 nTPM
FANTOM5:147.0 Scaled Tags Per Million
Pig:135.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 356.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 348.0
1981 Female, age 72, midline 371.1
2816 Male, age 47, midline 346.7
2194 Female, age 79, both hemispheres 344.9
2565 Male, age 75, midline 343.1
2048 Male, age 55, midline 334.4
Cervical spinal cord, dorsal horn
nTPM: 356.8
2296 Male, age 66, both hemispheres 419.1
2173 Female, age 72, unknown 387.7
2069 Male, age 47, both hemispheres 350.9
1877 Male, age 55, unknown 336.6
2297 Male, age 75, both hemispheres 326.1
2721 Male, age 90, both hemispheres 320.3
Cervical spinal cord, ventral horn
nTPM: 351.0
2098 Female, age 72, unknown 368.0
2480 Male, age 75, both hemispheres 354.5
2820 Female, age 79, both hemispheres 350.4
2068 Male, age 55, unknown 349.0
2809 Male, age 90, both hemispheres 343.3
2295 Male, age 66, both hemispheres 340.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 487.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 487.5
Samples: 159

Max nTPM: 952.8
Min nTPM: 224.2
Std nTPM: 140.1
Median nTPM: 477.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 952.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 925.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 830.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 803.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 798.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 790.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 785.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 768.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 758.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 744.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 739.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 721.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 711.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 701.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 671.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 666.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 651.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 648.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 646.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 640.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 639.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 635.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 635.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 633.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 630.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 627.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 622.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 621.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 607.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 597.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 597.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 588.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 585.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 576.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 573.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 571.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 571.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 568.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 565.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 565.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 559.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 553.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 550.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 542.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 541.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 540.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 538.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 537.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 534.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 531.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 531.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 525.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 524.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 521.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 518.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 516.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 515.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 512.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 511.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 510.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 509.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 508.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 508.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 507.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 507.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 506.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 506.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 503.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 501.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 500.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 494.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 493.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 492.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 491.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 488.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 482.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 481.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 481.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 480.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 477.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 476.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 474.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 472.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 470.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 470.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 462.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 459.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 457.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 457.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 457.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 457.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 456.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 455.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 455.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 452.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 452.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 449.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 444.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 444.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 443.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 438.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 438.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 437.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 435.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 435.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 432.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 428.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 425.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 415.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 413.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 412.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 412.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 411.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 408.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 407.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 407.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 405.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 402.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 401.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 391.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 389.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 386.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 384.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 382.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 375.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 372.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 368.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 359.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 356.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 354.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 352.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 349.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 348.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 342.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 340.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 338.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 337.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 337.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 335.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 329.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 328.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 320.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 320.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 320.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 319.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 318.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 305.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 302.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 299.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 278.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 269.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 268.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 266.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 263.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 242.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 233.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 230.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 227.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 224.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 147.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 147.0
FF:10181-103D1 60 years, female 181.0
FF:10159-103A6 76 years, female 112.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 135.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 91.5
Samples: 4

Max nTPM: 94.1
Min nTPM: 88.4
Sample A Female 94.1
Sample B Female 88.4
Sample C Male 90.3
Sample D Male 93.0
Ventral spinal cord
nTPM: 135.1
Samples: 4

Max nTPM: 149.6
Min nTPM: 117.9
Sample A Female 125.7
Sample B Female 149.6
Sample C Male 147.1
Sample D Male 117.9

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