MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:98.6 nTPM
HPA:98.6 nTPM
GTEx:58.6 nTPM
FANTOM5:111.7 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:29.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.1
1870 Female, age 42, unknown 98.8
2586 Male, age 75, left hemisphere 97.4
1833 Male, age 53, unknown 96.3
2411 Female, age 72, unknown 94.6
2019 Male, age 18, unknown 94.0
1827 Male, age 72, unknown 93.1
2219 Male, age 76, both hemispheres 92.8
1830 Male, age 51, unknown 92.6
2666 Male, age 74, left hemisphere 91.5
2828 Female, age 72, unknown 90.3
Dorsal raphe nucleus
nTPM: 92.8
2298 Female, age 72, unknown 99.6
2750 Male, age 76, both hemispheres 95.0
2047 Male, age 72, unknown 91.1
2016 Female, age 72, unknown 90.8
1828 Male, age 53, unknown 87.7
Inferior colliculus
nTPM: 92.8
2097 Female, age 72, unknown 95.3
2849 Male, age 72, unknown 94.1
1848 Female, age 42, unknown 94.0
1890 Male, age 53, unknown 88.0
Median raphe nucleus
nTPM: 94.8
2220 Male, age 76, midline 94.8
Pedunculopontine tegmental nucleus
nTPM: 98.6
2334 Male, age 80, both hemispheres 100.3
2338 Male, age 61, both hemispheres 99.7
1921 Female, age 85, both hemispheres 95.9
Periaquaductal grey, anterior
nTPM: 93.7
2502 Female, age 75, unknown 96.9
1795 Male, age 51, unknown 92.1
1947 Male, age 18, unknown 92.1
Periaquaductal grey, dorsal
nTPM: 89.8
1840 Male, age 53, unknown 92.1
2850 Male, age 76, both hemispheres 91.5
1831 Male, age 72, unknown 90.4
2464 Female, age 72, unknown 85.1
Periaquaductal grey, lateral
nTPM: 90.5
2053 Male, age 18, unknown 94.2
2272 Male, age 74, both hemispheres 89.7
2140 Male, age 76, both hemispheres 87.5
Pretectal area
nTPM: 93.2
1944 Female, age 72, unknown 96.3
1815 Male, age 53, unknown 95.8
2224 Female, age 72, unknown 95.1
1817 Female, age 42, unknown 95.0
1816 Male, age 51, unknown 94.9
2825 Male, age 18, unknown 94.0
2007 Male, age 72, unknown 93.7
2667 Female, age 75, unknown 92.4
2316 Male, age 76, right hemisphere 91.7
2273 Male, age 74, both hemispheres 90.3
2407 Male, age 75, both hemispheres 85.9
Red nucleus
nTPM: 97.2
1904 Male, age 53, unknown 102.5
2503 Female, age 72, unknown 102.0
1821 Female, age 72, unknown 101.9
1865 Male, age 51, unknown 100.6
2785 Male, age 18, unknown 100.2
2227 Male, age 72, unknown 97.9
1954 Female, age 42, unknown 96.4
2769 Male, age 72, unknown 95.6
2725 Female, age 75, unknown 94.3
2823 Male, age 76, right hemisphere 94.1
2584 Male, age 75, left hemisphere 92.4
2588 Male, age 74, left hemisphere 89.1
Substantia nigra
nTPM: 90.8
2699 Male, age 18, unknown 93.9
1851 Male, age 51, unknown 93.1
1889 Female, age 72, unknown 92.7
1941 Male, age 53, unknown 91.9
1916 Female, age 42, unknown 91.0
2590 Female, age 75, unknown 90.7
2665 Male, age 74, both hemispheres 89.3
2583 Male, age 75, right hemisphere 89.2
2409 Female, age 72, unknown 88.4
2241 Male, age 72, unknown 88.0
Superior colliculus
nTPM: 94.1
1913 Female, age 42, unknown 102.3
2587 Male, age 74, left hemisphere 99.6
1895 Male, age 76, right hemisphere 98.0
1995 Male, age 72, unknown 97.2
1796 Male, age 53, unknown 94.0
2668 Female, age 75, unknown 94.0
1839 Male, age 51, unknown 91.2
2087 Female, age 72, unknown 90.5
2664 Male, age 75, both hemispheres 88.9
2261 Male, age 18, unknown 85.6
Ventral tegmental area
nTPM: 92.4
2223 Female, age 72, unknown 96.1
2410 Female, age 72, unknown 94.4
1915 Female, age 42, unknown 92.6
2218 Male, age 76, both hemispheres 91.1
1942 Male, age 51, unknown 90.7
2021 Male, age 53, unknown 89.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.6
Samples: 139

Max nTPM: 191.8
Min nTPM: 27.3
Std nTPM: 22.9
Median nTPM: 54.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 151.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 137.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 127.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 110.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 96.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 96.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 96.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 94.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 90.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 87.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.7
FF:10158-103A5 76 years, female 111.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 30.4
Min nTPM: 14.0
Sample A Female 30.4
Sample B Female 21.1
Sample C Male 14.0
Sample D Male 20.9
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 28.5
Min nTPM: 20.3
Sample B Female 20.3
Sample C Male 28.5
Sample D Male 23.1
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 30.4
Min nTPM: 17.3
Sample A Female 30.4
Sample B Female 17.3
Sample C Male 20.2
Sample D Male 17.3
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 31.5
Min nTPM: 14.4
Sample A Female 31.5
Sample B Female 15.6
Sample C Male 14.4
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 34.1
Min nTPM: 26.0
Sample A Male 34.1
Sample B Male 29.5
Sample C Female 26.0
Sample D Female 28.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.