BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:104.3 nTPM
HPA:104.3 nTPM
GTEx:49.4 nTPM
FANTOM5:124.0 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:45.2 nTPM

CAUDATE - Antibody stainingi
Antibody HPA045156
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 104.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 95.2
2846 Female, age 79, unknown 98.9
1857 Female, age 85, left hemisphere 98.5
2288 Male, age 75, left hemisphere 97.9
2290 Female, age 72, unknown 96.0
2481 Female, age 94, left hemisphere 94.5
1854 Male, age 80, left hemisphere 94.2
1781 Male, age 74, unknown 93.0
2289 Male, age 61, right hemisphere 88.6
Claustrum
nTPM: 93.3
1956 Male, age 74, unknown 99.9
2196 Female, age 79, unknown 99.5
2198 Male, age 80, both hemispheres 94.4
2292 Female, age 85, both hemispheres 93.6
2491 Male, age 75, both hemispheres 93.3
2568 Male, age 61, both hemispheres 90.8
2392 Female, age 94, both hemispheres 90.6
2645 Female, age 72, unknown 90.5
2284 Female, age 91, both hemispheres 87.3
Globus pallidus, externus
nTPM: 95.4
1996 Male, age 80, right hemisphere 103.6
2772 Female, age 79, unknown 102.4
2646 Male, age 61, right hemisphere 100.4
2395 Male, age 75, both hemispheres 88.9
2567 Female, age 72, unknown 81.6
Globus pallidus, internus
nTPM: 104.3
2287 Male, age 75, right hemisphere 114.7
2778 Female, age 91, both hemispheres 111.6
2037 Male, age 80, right hemisphere 102.7
2111 Female, age 85, right hemisphere 102.0
1818 Male, age 74, unknown 101.2
2483 Female, age 94, right hemisphere 99.7
2566 Female, age 72, unknown 98.1
Nucleus accumbens
nTPM: 96.8
2698 Female, age 72, unknown 105.0
2391 Female, age 94, left hemisphere 100.2
1806 Female, age 85, left hemisphere 99.4
2286 Male, age 75, left hemisphere 99.2
1856 Female, age 91, right hemisphere 96.7
1783 Male, age 74, unknown 96.3
2732 Male, age 80, right hemisphere 88.8
2824 Male, age 61, right hemisphere 88.6
Nucleus basalis of Meynert
nTPM: 95.7
2569 Male, age 61, both hemispheres 103.3
2821 Male, age 75, both hemispheres 98.5
2484 Female, age 94, left hemisphere 91.0
2393 Male, age 80, right hemisphere 90.0
Nucleus of the diagonal band
nTPM: 93.6
2775 Male, age 80, right hemisphere 98.1
1812 Female, age 91, both hemispheres 94.1
2195 Female, age 85, both hemispheres 93.0
2029 Male, age 61, right hemisphere 91.6
1979 Male, age 74, unknown 91.0
Olfactory tubercle
nTPM: 91.8
1846 Male, age 80, right hemisphere 96.9
1998 Female, age 91, both hemispheres 92.5
2856 Male, age 75, right hemisphere 89.8
2487 Female, age 94, left hemisphere 87.8
Putamen
nTPM: 92.2
2466 Female, age 79, unknown 96.1
2482 Female, age 94, left hemisphere 95.6
1937 Female, age 91, right hemisphere 94.2
1838 Male, age 80, right hemisphere 93.6
2647 Male, age 75, left hemisphere 89.5
2489 Female, age 72, unknown 89.1
1829 Male, age 74, unknown 87.4
Septal nuclei
nTPM: 91.0
2031 Female, age 72, unknown 96.9
2009 Female, age 91, both hemispheres 93.0
2199 Male, age 80, right hemisphere 92.3
1960 Male, age 74, unknown 91.8
2629 Female, age 94, right hemisphere 91.8
2059 Female, age 85, both hemispheres 85.6
2394 Male, age 61, left hemisphere 85.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.8
Samples: 246

Max nTPM: 105.6
Min nTPM: 3.8
Std nTPM: 16.0
Median nTPM: 40.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 105.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 103.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 96.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 91.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 84.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 83.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 79.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 77.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 77.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 77.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 75.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.0
Samples: 246

Max nTPM: 92.3
Min nTPM: 8.0
Std nTPM: 14.2
Median nTPM: 45.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 92.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 91.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 84.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 84.2
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 83.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 80.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 79.8
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 79.3
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 76.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 76.7
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 76.6
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Brain - Putamen (basal ganglia)
Average nTPM: 49.4
Samples: 205

Max nTPM: 119.4
Min nTPM: 15.5
Std nTPM: 15.3
Median nTPM: 47.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 119.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 103.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 90.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 88.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 88.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 84.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 78.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 74.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 73.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 73.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 73.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 111.1
FF:10164-103B2 76 years, female 111.1
Globus pallidus
Scaled Tags Per Million: 111.6
FF:10175-103C4 60 years, female 125.5
FF:10161-103A8 76 years, female 97.7
Nucleus accumbens
Scaled Tags Per Million: 120.1
FF:10037-101F1 23-56 years, mixed 120.1
Putamen
Scaled Tags Per Million: 124.0
FF:10176-103C5 60 years, female 124.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Caudate
nTPM: 16.8
Samples: 4

Max nTPM: 19.5
Min nTPM: 14.3
Sample A Female 17.0
Sample B Female 16.5
Sample C Male 19.5
Sample D Male 14.3
Putamen
nTPM: 17.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 13.3
Sample A Female 19.1
Sample B Female 13.3
Sample C Male 17.8
Sample D Male 17.8
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.2
Sample A Female 21.6
Sample B Female 17.6
Sample C Male 21.2
Sample D Male 14.2
Ventral pallidum
nTPM: 16.2
Samples: 4

Max nTPM: 17.9
Min nTPM: 14.3
Sample A Female 17.1
Sample B Female 17.9
Sample C Male 14.3
Sample D Male 15.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 44.8
Samples: 4

Max nTPM: 57.8
Min nTPM: 39.0
Sample A Male 42.5
Sample B Male 57.8
Sample C Female 39.9
Sample D Female 39.0
Septum
nTPM: 41.8
Samples: 4

Max nTPM: 49.3
Min nTPM: 37.5
Sample A Male 38.1
Sample B Male 49.3
Sample C Female 37.5
Sample D Female 42.2
Ventral forebrain
nTPM: 45.2
Samples: 4

Max nTPM: 47.2
Min nTPM: 43.2
Sample A Male 44.3
Sample B Male 43.2
Sample C Female 47.2
Sample D Female 46.2

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