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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:109.8 nTPM
HPA:109.8 nTPM
GTEx:155.9 nTPM
FANTOM5:426.4 Scaled Tags Per Million
Pig:72.8 nTPM
Mouse:311.3 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 109.8
Sample id Sample description nTPM
Amygdala
nTPM: 82.4
2814 Male, age 76, right hemisphere 93.6
2517 Female, age 94, left hemisphere 88.0
1987 Female, age 91, left hemisphere 82.1
2514 Male, age 75, right hemisphere 79.3
2695 Female, age 67, right hemisphere 69.0
Basal amygdala
nTPM: 104.1
2243 Female, age 91, right hemisphere 134.9
2685 Female, age 94, left hemisphere 128.2
2609 Male, age 75, right hemisphere 98.9
1955 Male, age 76, both hemispheres 98.5
2110 Male, age 80, left hemisphere 93.4
2827 Female, age 67, right hemisphere 70.5
Central amygdala
nTPM: 109.8
2826 Female, age 94, left hemisphere 136.4
2239 Male, age 80, left hemisphere 118.7
2701 Female, age 91, right hemisphere 117.2
2515 Male, age 75, right hemisphere 90.0
1905 Male, age 76, both hemispheres 86.6
Corticomedial amygdala
nTPM: 102.2
2242 Female, age 91, right hemisphere 129.4
2829 Male, age 80, left hemisphere 119.3
2240 Male, age 76, both hemispheres 106.0
2535 Female, age 67, right hemisphere 94.2
2429 Female, age 94, left hemisphere 89.0
2428 Male, age 75, right hemisphere 75.4
Lateral amygdala
nTPM: 88.5
2534 Female, age 94, left hemisphere 144.9
1883 Male, age 76, both hemispheres 95.5
2255 Female, age 91, right hemisphere 91.4
2256 Male, age 80, left hemisphere 81.6
2516 Male, age 75, right hemisphere 77.1
2830 Female, age 67, right hemisphere 40.6
Stria terminalis, bed nucleus
nTPM: 106.6
1974 Female, age 91, both hemispheres 115.0
2201 Male, age 74, unknown 109.7
2486 Female, age 94, both hemispheres 95.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 155.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 155.9
Samples: 152

Max nTPM: 320.0
Min nTPM: 34.1
Std nTPM: 51.3
Median nTPM: 148.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 320.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 289.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 280.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 267.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 266.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 258.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 251.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 250.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 249.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 246.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 245.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 235.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 233.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 231.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 225.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 220.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 218.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 215.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 214.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 213.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 213.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 212.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 210.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 207.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 207.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 206.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 203.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 201.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 201.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 197.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 197.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 195.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 194.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 193.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 193.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 191.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 189.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 187.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 187.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 186.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 186.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 184.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 184.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 183.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 177.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 177.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 175.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 174.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 171.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 170.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 169.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 169.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 169.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 168.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 168.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 167.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 166.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 166.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 164.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 163.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 162.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 162.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 162.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 161.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 160.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 160.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 156.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 155.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 154.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 152.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 151.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 150.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 149.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 147.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 147.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 147.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 146.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 146.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 146.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 145.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 145.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 144.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 143.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 143.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 141.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 141.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 140.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 140.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 140.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 139.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 138.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 137.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 137.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 135.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 135.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 134.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 134.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 133.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 131.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 130.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 129.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 129.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 127.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 126.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 125.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 125.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 124.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 119.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 118.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 117.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 114.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 113.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 111.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 111.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 110.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 109.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 107.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 106.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 106.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 106.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 103.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 101.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 98.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 98.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 96.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 95.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 95.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 91.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 91.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 90.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 89.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 82.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 82.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 82.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 81.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 70.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 64.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 55.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 37.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 34.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 426.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 426.4
FF:10151-102I7 76 years, female 426.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.8
Pig sample Sample description nTPM
Amygdala
nTPM: 72.7
Samples: 4

Max nTPM: 102.1
Min nTPM: 58.1
Sample A Female 102.1
Sample B Female 58.1
Sample C Male 64.2
Sample D Male 66.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 311.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 311.3
Samples: 4

Max nTPM: 337.1
Min nTPM: 286.4
Sample A Male 320.9
Sample B Male 286.4
Sample C Female 337.1
Sample D Female 300.9

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