BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:55.4 nTPM
HPA:55.4 nTPM
GTEx:65.4 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:82.1 nTPM
Allen mouse:2.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA068786
Glial cells Low
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.7
2846 Female, age 79, unknown 50.0
2288 Male, age 75, left hemisphere 49.6
2481 Female, age 94, left hemisphere 49.5
1781 Male, age 74, unknown 48.7
1854 Male, age 80, left hemisphere 45.8
1857 Female, age 85, left hemisphere 45.2
2290 Female, age 72, unknown 43.7
2289 Male, age 61, right hemisphere 41.2
Claustrum
nTPM: 53.4
2198 Male, age 80, both hemispheres 58.0
2568 Male, age 61, both hemispheres 57.0
1956 Male, age 74, unknown 54.3
2491 Male, age 75, both hemispheres 54.1
2645 Female, age 72, unknown 53.3
2284 Female, age 91, both hemispheres 52.9
2196 Female, age 79, unknown 51.8
2392 Female, age 94, both hemispheres 50.6
2292 Female, age 85, both hemispheres 48.8
Globus pallidus, externus
nTPM: 44.2
2395 Male, age 75, both hemispheres 47.9
2772 Female, age 79, unknown 47.0
1996 Male, age 80, right hemisphere 42.2
2567 Female, age 72, unknown 42.1
2646 Male, age 61, right hemisphere 41.6
Globus pallidus, internus
nTPM: 44.1
2287 Male, age 75, right hemisphere 46.9
2778 Female, age 91, both hemispheres 46.5
2483 Female, age 94, right hemisphere 45.6
1818 Male, age 74, unknown 44.5
2566 Female, age 72, unknown 42.9
2111 Female, age 85, right hemisphere 41.2
2037 Male, age 80, right hemisphere 40.8
Nucleus accumbens
nTPM: 46.3
1856 Female, age 91, right hemisphere 50.8
1783 Male, age 74, unknown 49.7
2824 Male, age 61, right hemisphere 47.3
2286 Male, age 75, left hemisphere 47.1
1806 Female, age 85, left hemisphere 45.5
2698 Female, age 72, unknown 45.0
2391 Female, age 94, left hemisphere 44.4
2732 Male, age 80, right hemisphere 40.6
Nucleus basalis of Meynert
nTPM: 44.3
2821 Male, age 75, both hemispheres 46.9
2569 Male, age 61, both hemispheres 43.6
2393 Male, age 80, right hemisphere 43.4
2484 Female, age 94, left hemisphere 43.3
Nucleus of the diagonal band
nTPM: 55.1
2775 Male, age 80, right hemisphere 62.5
2195 Female, age 85, both hemispheres 57.2
2029 Male, age 61, right hemisphere 56.6
1812 Female, age 91, both hemispheres 55.0
1979 Male, age 74, unknown 44.2
Olfactory tubercle
nTPM: 55.4
1846 Male, age 80, right hemisphere 56.6
1998 Female, age 91, both hemispheres 56.5
2487 Female, age 94, left hemisphere 56.5
2856 Male, age 75, right hemisphere 52.0
Putamen
nTPM: 47.4
2647 Male, age 75, left hemisphere 53.1
2466 Female, age 79, unknown 50.1
1838 Male, age 80, right hemisphere 47.2
2482 Female, age 94, left hemisphere 46.8
1937 Female, age 91, right hemisphere 46.0
2489 Female, age 72, unknown 44.8
1829 Male, age 74, unknown 44.2
Septal nuclei
nTPM: 51.4
1960 Male, age 74, unknown 62.3
2031 Female, age 72, unknown 57.6
2629 Female, age 94, right hemisphere 56.2
2009 Female, age 91, both hemispheres 49.6
2059 Female, age 85, both hemispheres 46.4
2394 Male, age 61, left hemisphere 45.9
2199 Male, age 80, right hemisphere 42.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 65.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.2
Samples: 246

Max nTPM: 120.3
Min nTPM: 31.0
Std nTPM: 14.2
Median nTPM: 55.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 120.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 110.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 97.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 96.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 92.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 91.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 90.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 88.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 87.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 87.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 86.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.4
Samples: 246

Max nTPM: 109.5
Min nTPM: 23.8
Std nTPM: 14.8
Median nTPM: 65.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 109.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 105.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 100.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 99.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 99.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 96.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 95.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 95.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 95.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 93.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 92.7
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Brain - Putamen (basal ganglia)
Average nTPM: 61.8
Samples: 205

Max nTPM: 103.9
Min nTPM: 37.4
Std nTPM: 14.0
Median nTPM: 59.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 103.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 101.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 99.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 98.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 93.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 93.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 91.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 91.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 91.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 90.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 89.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.1
FF:10164-103B2 76 years, female 85.1
Globus pallidus
Scaled Tags Per Million: 69.5
FF:10175-103C4 60 years, female 78.9
FF:10161-103A8 76 years, female 60.1
Nucleus accumbens
Scaled Tags Per Million: 87.3
FF:10037-101F1 23-56 years, mixed 87.3
Putamen
Scaled Tags Per Million: 95.3
FF:10176-103C5 60 years, female 95.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.8
Pig sample Sample description nTPM
Caudate
nTPM: 40.9
Samples: 4

Max nTPM: 49.4
Min nTPM: 35.5
Sample A Female 35.5
Sample B Female 42.5
Sample C Male 49.4
Sample D Male 36.2
Putamen
nTPM: 41.8
Samples: 4

Max nTPM: 51.0
Min nTPM: 33.8
Sample A Female 33.8
Sample B Female 36.1
Sample C Male 51.0
Sample D Male 46.4
Septum
nTPM: 38.2
Samples: 4

Max nTPM: 40.1
Min nTPM: 36.5
Sample A Female 40.1
Sample B Female 37.7
Sample C Male 36.5
Sample D Male 38.3
Ventral pallidum
nTPM: 37.0
Samples: 4

Max nTPM: 39.2
Min nTPM: 35.4
Sample A Female 35.4
Sample B Female 39.2
Sample C Male 36.4
Sample D Male 36.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 82.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 77.8
Samples: 4

Max nTPM: 85.5
Min nTPM: 68.7
Sample A Male 85.5
Sample B Male 85.5
Sample C Female 71.4
Sample D Female 68.7
Septum
nTPM: 82.1
Samples: 4

Max nTPM: 86.0
Min nTPM: 75.1
Sample A Male 86.0
Sample B Male 82.8
Sample C Female 84.5
Sample D Female 75.1
Ventral forebrain
nTPM: 79.6
Samples: 4

Max nTPM: 89.5
Min nTPM: 71.0
Sample A Male 81.6
Sample B Male 76.1
Sample C Female 89.5
Sample D Female 71.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
71992019 Antisense, RP_051012_04_A02, Mouse strain C57BL/6J (56 days, male) 2.3
Pallidum
Expression energy: 2.5
71992019 Antisense, RP_051012_04_A02, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

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