BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.6 nTPM
HPA:34.6 nTPM
GTEx:71.4 nTPM
FANTOM5:92.2 Scaled Tags Per Million
Pig:64.6 nTPM
Mouse:192.4 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.2
2481 Female, age 94, left hemisphere 39.6
2288 Male, age 75, left hemisphere 38.4
2290 Female, age 72, unknown 34.4
1857 Female, age 85, left hemisphere 33.2
2289 Male, age 61, right hemisphere 32.5
2846 Female, age 79, unknown 31.5
1781 Male, age 74, unknown 28.4
1854 Male, age 80, left hemisphere 28.0
Claustrum
nTPM: 19.8
2568 Male, age 61, both hemispheres 24.1
2284 Female, age 91, both hemispheres 24.0
2198 Male, age 80, both hemispheres 22.3
2491 Male, age 75, both hemispheres 21.7
2645 Female, age 72, unknown 18.5
2196 Female, age 79, unknown 18.1
1956 Male, age 74, unknown 16.7
2292 Female, age 85, both hemispheres 16.5
2392 Female, age 94, both hemispheres 16.4
Globus pallidus, externus
nTPM: 18.6
2646 Male, age 61, right hemisphere 21.4
1996 Male, age 80, right hemisphere 19.9
2567 Female, age 72, unknown 18.2
2772 Female, age 79, unknown 17.5
2395 Male, age 75, both hemispheres 15.9
Globus pallidus, internus
nTPM: 18.2
2483 Female, age 94, right hemisphere 23.2
2287 Male, age 75, right hemisphere 21.7
1818 Male, age 74, unknown 18.0
2566 Female, age 72, unknown 16.8
2037 Male, age 80, right hemisphere 16.5
2778 Female, age 91, both hemispheres 16.5
2111 Female, age 85, right hemisphere 14.7
Nucleus accumbens
nTPM: 27.9
1856 Female, age 91, right hemisphere 38.8
1783 Male, age 74, unknown 33.1
1806 Female, age 85, left hemisphere 32.2
2286 Male, age 75, left hemisphere 30.1
2698 Female, age 72, unknown 24.4
2824 Male, age 61, right hemisphere 24.4
2391 Female, age 94, left hemisphere 23.1
2732 Male, age 80, right hemisphere 17.4
Nucleus basalis of Meynert
nTPM: 27.0
2484 Female, age 94, left hemisphere 37.4
2393 Male, age 80, right hemisphere 25.8
2821 Male, age 75, both hemispheres 22.9
2569 Male, age 61, both hemispheres 22.1
Nucleus of the diagonal band
nTPM: 23.0
1812 Female, age 91, both hemispheres 25.2
1979 Male, age 74, unknown 23.6
2195 Female, age 85, both hemispheres 22.3
2029 Male, age 61, right hemisphere 21.9
2775 Male, age 80, right hemisphere 21.8
Olfactory tubercle
nTPM: 20.1
1998 Female, age 91, both hemispheres 23.1
1846 Male, age 80, right hemisphere 20.9
2856 Male, age 75, right hemisphere 20.1
2487 Female, age 94, left hemisphere 16.5
Putamen
nTPM: 34.6
2647 Male, age 75, left hemisphere 37.4
1838 Male, age 80, right hemisphere 37.1
1829 Male, age 74, unknown 36.9
2466 Female, age 79, unknown 34.9
2489 Female, age 72, unknown 34.6
1937 Female, age 91, right hemisphere 32.9
2482 Female, age 94, left hemisphere 28.7
Septal nuclei
nTPM: 19.3
1960 Male, age 74, unknown 23.6
2059 Female, age 85, both hemispheres 22.1
2009 Female, age 91, both hemispheres 20.9
2031 Female, age 72, unknown 20.5
2629 Female, age 94, right hemisphere 16.8
2394 Male, age 61, left hemisphere 15.6
2199 Male, age 80, right hemisphere 15.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 71.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 64.4
Samples: 246

Max nTPM: 154.8
Min nTPM: 11.6
Std nTPM: 25.9
Median nTPM: 63.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 154.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 142.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 136.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 134.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 134.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 130.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 120.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 116.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 116.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 114.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 112.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.0
Samples: 246

Max nTPM: 164.6
Min nTPM: 7.7
Std nTPM: 21.6
Median nTPM: 61.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 164.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 132.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 114.9
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 108.8
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 108.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 103.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 102.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 100.7
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 100.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 98.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 97.1
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Brain - Putamen (basal ganglia)
Average nTPM: 71.4
Samples: 205

Max nTPM: 143.0
Min nTPM: 14.2
Std nTPM: 25.8
Median nTPM: 70.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 143.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 136.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 133.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 131.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 131.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 128.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 125.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 124.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 123.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 118.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 118.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.7
FF:10164-103B2 76 years, female 45.7
Globus pallidus
Scaled Tags Per Million: 21.1
FF:10175-103C4 60 years, female 26.8
FF:10161-103A8 76 years, female 15.5
Nucleus accumbens
Scaled Tags Per Million: 92.2
FF:10037-101F1 23-56 years, mixed 92.2
Putamen
Scaled Tags Per Million: 73.2
FF:10176-103C5 60 years, female 73.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 64.6
Pig sample Sample description nTPM
Caudate
nTPM: 64.6
Samples: 4

Max nTPM: 93.1
Min nTPM: 46.8
Sample A Female 46.8
Sample B Female 58.5
Sample C Male 93.1
Sample D Male 60.0
Putamen
nTPM: 60.7
Samples: 4

Max nTPM: 87.4
Min nTPM: 32.4
Sample A Female 32.4
Sample B Female 51.8
Sample C Male 87.4
Sample D Male 71.3
Septum
nTPM: 29.6
Samples: 4

Max nTPM: 38.7
Min nTPM: 21.9
Sample A Female 38.7
Sample B Female 33.5
Sample C Male 24.3
Sample D Male 21.9
Ventral pallidum
nTPM: 41.5
Samples: 4

Max nTPM: 48.4
Min nTPM: 31.8
Sample A Female 42.9
Sample B Female 48.4
Sample C Male 31.8
Sample D Male 42.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 192.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 192.4
Samples: 4

Max nTPM: 237.3
Min nTPM: 137.7
Sample A Male 231.4
Sample B Male 237.3
Sample C Female 137.7
Sample D Female 163.1
Septum
nTPM: 86.2
Samples: 4

Max nTPM: 97.4
Min nTPM: 76.9
Sample A Male 97.4
Sample B Male 90.3
Sample C Female 76.9
Sample D Female 80.1
Ventral forebrain
nTPM: 128.5
Samples: 4

Max nTPM: 148.8
Min nTPM: 109.9
Sample A Male 148.8
Sample B Male 115.2
Sample C Female 140.2
Sample D Female 109.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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